| Clone Name | rbaet79b04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|L37070.1|WHTHSP169L Triticum aestivum clone 17LC3 heat shock protein 16.9 (hsp16.9-17LC3) mRNA, partial cds Length = 440 Score = 69.9 bits (35), Expect = 3e-09 Identities = 64/74 (86%), Gaps = 6/74 (8%) Strand = Plus / Plus Query: 100 gtagcactaaatgaacaaaccggaagcgagtggcttcatcgac------acaaccttgat 153 |||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||| Sbjct: 294 gtagtactaaatgaacaaacaggaagcgactggcttcatcgaccgaacaacaaccttgat 353 Query: 154 ttcaaactcgtggc 167 |||||||| ||||| Sbjct: 354 ttcaaacttgtggc 367
>ref|XM_636462.1| Dictyostelium discoideum aldehyde dehydrogenase (DDB0231482), partial mRNA Length = 1770 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 acaaatcttacaagatttca 55 |||||||||||||||||||| Sbjct: 339 acaaatcttacaagatttca 358
>gb|AC154028.7| Mus musculus 10 BAC RP23-246J13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206191 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 caccttccatagccactggatatacaaa 40 |||||||||||||||||| |||||||| Sbjct: 41677 caccttccatagccactgtgtatacaaa 41650
>gb|AC158598.7| Mus musculus 10 BAC RP24-286B23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162273 Score = 40.1 bits (20), Expect = 2.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 13 caccttccatagccactggatatacaaa 40 |||||||||||||||||| |||||||| Sbjct: 153678 caccttccatagccactgtgtatacaaa 153651
>emb|AL391707.9| Human DNA sequence from clone RP11-166B18 on chromosome 10, complete sequence Length = 166826 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 17 ttccatagccactggatat 35 ||||||||||||||||||| Sbjct: 131264 ttccatagccactggatat 131246
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 161 tcgtggcacaataaattat 179 ||||||||||||||||||| Sbjct: 13744435 tcgtggcacaataaattat 13744453
>dbj|AP003205.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1146B04 Length = 145186 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 161 tcgtggcacaataaattat 179 ||||||||||||||||||| Sbjct: 82763 tcgtggcacaataaattat 82781
>gb|AC090358.16| Homo sapiens chromosome 18, clone RP11-775G23, complete sequence Length = 176680 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 174 aattatgcactgcactgca 192 ||||||||||||||||||| Sbjct: 38182 aattatgcactgcactgca 38164
>gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, complete sequence Length = 180660 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 tccatagccactggatatacaaa 40 ||||||||||||| ||||||||| Sbjct: 95161 tccatagccactgcatatacaaa 95183 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,391,527 Number of Sequences: 3902068 Number of extensions: 1391527 Number of successful extensions: 90859 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90818 Number of HSP's gapped (non-prelim): 41 length of query: 192 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 170 effective length of database: 17,147,199,772 effective search space: 2915023961240 effective search space used: 2915023961240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)