ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78h03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate... 44 0.11
2gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate... 44 0.11
3gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
4gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
5gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
6gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
7gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
8gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
9gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
10gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
11gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase... 44 0.11
12gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.45
13gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequ... 42 0.45
14dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.45
15gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 1.8
16gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.8
17gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, comple... 40 1.8
18gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 1.8
19emb|CR937191.1| Single read from an extremity of a cDNA clone ma... 40 1.8
20emb|CR354438.9| Zebrafish DNA sequence from clone CH211-243G16 i... 40 1.8
21emb|BX276114.6| Zebrafish DNA sequence from clone CH211-176L11 i... 40 1.8
22emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 i... 40 1.8
23emb|BX322622.10| Zebrafish DNA sequence from clone DKEYP-14D3 in... 40 1.8
24gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Can... 40 1.8
25emb|BX248242.5| Zebrafish DNA sequence from clone BUSM1-205D10 i... 40 1.8
26emb|AL691516.5| Zebrafish DNA sequence from clone BUSM1-116L04 i... 40 1.8
27gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complet... 40 1.8
28ref|XM_634273.1| Dictyostelium discoideum hypothetical protein (... 38 7.0
29gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, com... 38 7.0
30gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, comp... 38 7.0
31gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome... 38 7.0
32gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome... 38 7.0
33gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, comple... 38 7.0
34gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete ... 38 7.0
35emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chrom... 38 7.0
36emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on ch... 38 7.0
37emb|AL365321.16| Human DNA sequence from clone RP11-324J2 on chr... 38 7.0
38emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on ch... 38 7.0
39emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chrom... 38 7.0
40emb|AL808023.3| Mouse DNA sequence from clone RP23-32B6 on chrom... 38 7.0
41gb|BC056343.1| Mus musculus sortilin 1, mRNA (cDNA clone MGC:739... 38 7.0
42emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chr... 38 7.0
43gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Ca... 38 7.0
44dbj|AK147442.1| Mus musculus adult male brain UNDEFINED_CELL_LIN... 38 7.0
45gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome... 38 7.0
46gb|BC034129.1| Mus musculus sortilin 1, mRNA (cDNA clone IMAGE:4... 38 7.0
47emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in... 38 7.0
48gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cance... 38 7.0
49dbj|AK177805.1| Mus musculus cDNA, clone:Y0G0104F07, strand:minu... 38 7.0
50gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, co... 38 7.0
51dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, ... 38 7.0
52dbj|BS000079.1| Pan troglodytes chromosome 22 clone:RP43-047O12,... 38 7.0
53gb|AF175279.1|AF175279 Mus musculus neurotensin receptor 3 mRNA,... 38 7.0
54gb|AC153433.6| Mus musculus 10 BAC RP23-69K22 (Roswell Park Canc... 38 7.0
55dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP... 38 7.0
56dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 7.0
57gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 38 7.0
58ref|NM_019972.2| Mus musculus sortilin 1 (Sort1), mRNA 38 7.0
59emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, ... 38 7.0
60emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in... 38 7.0
61gb|U59839.1|FHU59839 Fundulus heteroclitus lactate dehydrogenase... 38 7.0
62emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chr... 38 7.0
63emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chr... 38 7.0
64emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chrom... 38 7.0 
>gb|AF082693.1|AF082693 Fundulus heteroclitus clone FHGA7 lactate dehydrogenase B gene,
          promoter
          Length = 309

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 8  tcgatgatgatgatacaaataa 29
          ||||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaataa 33
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>gb|AF082692.1|AF082692 Fundulus heteroclitus clone FHGA6 lactate dehydrogenase B gene,
          promoter
          Length = 315

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 8  tcgatgatgatgatacaaataa 29
          ||||||||||||||||||||||
Sbjct: 54 tcgatgatgatgatacaaataa 33
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>gb|U59854.1|FHU59854 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaataa 783
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>gb|U59853.1|FHU59853 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1041

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaataa 785
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>gb|U59843.1|FHU59843 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1040

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 806 tcgatgatgatgatacaaataa 785
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>gb|U59841.1|FHU59841 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1084

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 844 tcgatgatgatgatacaaataa 823
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>gb|U59837.1|FHU59837 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1042

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 808 tcgatgatgatgatacaaataa 787
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>gb|U59836.1|FHU59836 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1039

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 805 tcgatgatgatgatacaaataa 784
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>gb|U59835.1|FHU59835 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1038

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 804 tcgatgatgatgatacaaataa 783
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>gb|U59834.1|FHU59834 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaataa 781
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>gb|U59833.1|FHU59833 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1037

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 8   tcgatgatgatgatacaaataa 29
           ||||||||||||||||||||||
Sbjct: 802 tcgatgatgatgatacaaataa 781
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>gb|AC147462.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1110B01,
             complete sequence
          Length = 160142

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 8     tcgatgatgatgatacaaata 28
             |||||||||||||||||||||
Sbjct: 28388 tcgatgatgatgatacaaata 28408
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>gb|U49830.2| Caenorhabditis elegans cosmid C33F10, complete sequence
          Length = 46463

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 9     cgatgatgatgatacaaataa 29
             |||||||||||||||||||||
Sbjct: 44151 cgatgatgatgatacaaataa 44171
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 8        tcgatgatgatgatacaaata 28
                |||||||||||||||||||||
Sbjct: 21435305 tcgatgatgatgatacaaata 21435325



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       ccgatggacagacggatggc 112
                ||||||||||||||||||||
Sbjct: 13146461 ccgatggacagacggatggc 13146442



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 93       ccgatggacagacggatggc 112
                ||||||||||||||||||||
Sbjct: 13143677 ccgatggacagacggatggc 13143658
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>gb|AE014851.1| Plasmodium falciparum 3D7 chromosome 12, section 8 of 9 of the complete
             sequence
          Length = 251762

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 11    atgatgatgatacaaataaa 30
             ||||||||||||||||||||
Sbjct: 91207 atgatgatgatacaaataaa 91226
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>gb|AC135915.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0082F22, complete sequence
          Length = 176038

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ccgatggacagacggatggc 112
              ||||||||||||||||||||
Sbjct: 109238 ccgatggacagacggatggc 109219



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ccgatggacagacggatggc 112
              ||||||||||||||||||||
Sbjct: 106454 ccgatggacagacggatggc 106435
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>gb|AC122805.4| Mus musculus BAC clone RP23-296O23 from 3, complete sequence
          Length = 202733

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    gtacaagtacacatgcatat 87
             ||||||||||||||||||||
Sbjct: 22438 gtacaagtacacatgcatat 22419
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>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gatgatgatgatacaaataa 29
             ||||||||||||||||||||
Sbjct: 26076 gatgatgatgatacaaataa 26057
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>emb|CR937191.1| Single read from an extremity of a cDNA clone made from Aedes
           aegypti total adult females. 5-prime end of clone
           KW0AAB2YK24AAM1 from strain Liverpool of Aedes aegypti
           (yellow fever mosquito)
          Length = 908

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 8   tcgatgatgatgatacaaat 27
           ||||||||||||||||||||
Sbjct: 318 tcgatgatgatgatacaaat 337
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>emb|CR354438.9| Zebrafish DNA sequence from clone CH211-243G16 in linkage group 8,
             complete sequence
          Length = 136324

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    atgatgatacaaataaacacacaa 37
             ||||||| ||||||||||||||||
Sbjct: 58180 atgatgaaacaaataaacacacaa 58203
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>emb|BX276114.6| Zebrafish DNA sequence from clone CH211-176L11 in linkage group 20
              Contains the kit gene for kit receptor, the 3' end of the
              pdgfra gene for platelet derived growth factor receptor
              alpha and a CpG island, complete sequence
          Length = 134212

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     atgatacaaataaacacaca 36
              ||||||||||||||||||||
Sbjct: 114632 atgatacaaataaacacaca 114613
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>emb|BX470077.5| Zebrafish DNA sequence from clone CH211-136P17 in linkage group 5,
              complete sequence
          Length = 165851

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 111    gctgctaaacacatttaact 130
              ||||||||||||||||||||
Sbjct: 103691 gctgctaaacacatttaact 103672
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>emb|BX322622.10| Zebrafish DNA sequence from clone DKEYP-14D3 in linkage group 8, complete
              sequence
          Length = 162365

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 14     atgatgatacaaataaacacacaa 37
              ||||||| ||||||||||||||||
Sbjct: 158836 atgatgaaacaaataaacacacaa 158859
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>gb|AC079384.26| Homo sapiens 12 BAC RP11-148B3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 180555

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gatgatgatgatacaaataa 29
             ||||||||||||||||||||
Sbjct: 61129 gatgatgatgatacaaataa 61110
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>emb|BX248242.5| Zebrafish DNA sequence from clone BUSM1-205D10 in linkage group 20,
             complete sequence
          Length = 104779

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    atgatacaaataaacacaca 36
             ||||||||||||||||||||
Sbjct: 10904 atgatacaaataaacacaca 10885
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>emb|AL691516.5| Zebrafish DNA sequence from clone BUSM1-116L04 in linkage group 20,
             complete sequence
          Length = 80250

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    atgatacaaataaacacaca 36
             ||||||||||||||||||||
Sbjct: 63793 atgatacaaataaacacaca 63774
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>gb|AC132143.3| Mus musculus BAC clone RP23-20J10 from 3, complete sequence
          Length = 205880

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     gtacaagtacacatgcatat 87
              ||||||||||||||||||||
Sbjct: 125910 gtacaagtacacatgcatat 125891
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>ref|XM_634273.1| Dictyostelium discoideum hypothetical protein (DDB0204997), partial
           mRNA
          Length = 1890

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 11  atgatgatgatacaaataa 29
           |||||||||||||||||||
Sbjct: 554 atgatgatgatacaaataa 572
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>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 98     ggacagacggatggctgct 116
              |||||||||||||||||||
Sbjct: 115211 ggacagacggatggctgct 115193
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>gb|AC025353.9| Mus musculus chromosome 9, clone RP23-93E19, complete sequence
          Length = 274853

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 20   atacaaataaacacacaaa 38
            |||||||||||||||||||
Sbjct: 6807 atacaaataaacacacaaa 6825
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>gb|AC139300.4| Mus musculus BAC clone RP23-258L8 from chromosome 18, complete sequence
          Length = 209617

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 14     atgatgatacaaataaacacaca 36
              ||||||||||| |||||||||||
Sbjct: 152417 atgatgatacacataaacacaca 152395
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>gb|AC133204.3| Mus musculus BAC clone RP23-106N3 from chromosome 5, complete sequence
          Length = 224181

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    tacaagtacacatgcatat 87
             |||||||||||||||||||
Sbjct: 52160 tacaagtacacatgcatat 52142
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>gb|AC125213.3| Mus musculus BAC clone RP23-136A14 from 7, complete sequence
          Length = 194309

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    tacaagtacacatgcatat 87
             |||||||||||||||||||
Sbjct: 94097 tacaagtacacatgcatat 94115
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>gb|AC116567.5| Mus musculus BAC clone RP23-1M9 from 5, complete sequence
          Length = 206570

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 69     tacaagtacacatgcatat 87
              |||||||||||||||||||
Sbjct: 109745 tacaagtacacatgcatat 109763
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>emb|AL589677.6| Human DNA sequence from clone RP11-12P4 on chromosome X, complete
             sequence
          Length = 129422

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 11    atgatgatgatacaaataa 29
             |||||||||||||||||||
Sbjct: 46876 atgatgatgatacaaataa 46858
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>emb|AL390119.25| Human DNA sequence from clone RP11-403P14 on chromosome 1 Contains the 3'
              end of the PBX1 gene for pre-B-cell leukemia transcription
              factor 1 and a ribosomal protein L35a (RPL35A) pseudogene,
              complete sequence
          Length = 197482

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 19     gatacaaataaacacacaa 37
              |||||||||||||||||||
Sbjct: 142281 gatacaaataaacacacaa 142263
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>emb|AL365321.16| Human DNA sequence from clone RP11-324J2 on chromosome 1 Contains the
             5' end of the PHTF1 gene for putative homeodomain
             transcription factor 1,  the 3' end of the gene for a
             novel protein (FLJ11220 and FLJ12104) and a CpG island,
             complete sequence
          Length = 40891

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 115   ctaaacacatttaacttcc 133
             |||||||||||||||||||
Sbjct: 30781 ctaaacacatttaacttcc 30799
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>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
            sequence
          Length = 92522

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 16   gatgatacaaataaacaca 34
            |||||||||||||||||||
Sbjct: 6786 gatgatacaaataaacaca 6768
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>emb|AL929357.1|PFA929357 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5
          Length = 341050

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 11     atgatgatgatacaaataa 29
              |||||||||||||||||||
Sbjct: 152048 atgatgatgatacaaataa 152030
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>emb|AL808023.3| Mouse DNA sequence from clone RP23-32B6 on chromosome 11 Contains the
             3' end of the Ube2g1 gene for ubiquitin-conjugating enzyme
             E2G 1 (UBC7 homolog, C. elegans), the 5' end of the Ankfy1
             gene for ankyrin repeat and FYVE domain containing 1 and a
             CpG island, complete sequence
          Length = 95661

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 10    gatgatgatgatacaaataaaca 32
             ||||||||||||| |||||||||
Sbjct: 18281 gatgatgatgatagaaataaaca 18259
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>gb|BC056343.1| Mus musculus sortilin 1, mRNA (cDNA clone MGC:73925 IMAGE:5704346),
            complete cds
          Length = 6804

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   ggacagacggatggctgct 116
            |||||||||||||||||||
Sbjct: 2003 ggacagacggatggctgct 1985
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>emb|AL603793.4| Mouse DNA sequence from clone RP23-131A14 on chromosome 11, complete
              sequence
          Length = 201815

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     atacaaataaacacacaaa 38
              |||||||||||||||||||
Sbjct: 155673 atacaaataaacacacaaa 155655
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>gb|AC025264.16| Homo sapiens 12 BAC RP11-704P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 193626

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     tacaaataaacacacaaag 39
              |||||||||||||||||||
Sbjct: 100653 tacaaataaacacacaaag 100671
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>dbj|AK147442.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN
            full-length enriched library, clone:M5C1042I07
            product:sortilin 1, full insert sequence
          Length = 6837

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   ggacagacggatggctgct 116
            |||||||||||||||||||
Sbjct: 2054 ggacagacggatggctgct 2036
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>gb|AC152718.6| Mus musculus BAC clone RP24-432B3 from chromosome 9, complete sequence
          Length = 174264

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 20    atacaaataaacacacaaa 38
             |||||||||||||||||||
Sbjct: 96811 atacaaataaacacacaaa 96829
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>gb|BC034129.1| Mus musculus sortilin 1, mRNA (cDNA clone IMAGE:4920258), partial cds
          Length = 2810

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   ggacagacggatggctgct 116
            |||||||||||||||||||
Sbjct: 1504 ggacagacggatggctgct 1486
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>emb|BX284646.4| Zebrafish DNA sequence from clone CH211-49J11 in linkage group 5,
             complete sequence
          Length = 182774

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    aaataaacacacaaagtac 42
             |||||||||||||||||||
Sbjct: 42959 aaataaacacacaaagtac 42977
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>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 181158

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     atacaaataaacacacaaa 38
              |||||||||||||||||||
Sbjct: 113631 atacaaataaacacacaaa 113613
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>dbj|AK177805.1| Mus musculus cDNA, clone:Y0G0104F07, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000016188, based on BLAT search
          Length = 230

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 98  ggacagacggatggctgct 116
           |||||||||||||||||||
Sbjct: 145 ggacagacggatggctgct 127
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>gb|AC102106.14| Mus musculus chromosome 18, clone RP23-92B24, complete sequence
          Length = 230823

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 15    tgatgatacaaataaacac 33
             |||||||||||||||||||
Sbjct: 15179 tgatgatacaaataaacac 15161
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>dbj|BS000080.1| Pan troglodytes chromosome 22 clone:PTB-090L14, map 22, complete
            sequences
          Length = 194210

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 20   atacaaataaacacacaaa 38
            |||||||||||||||||||
Sbjct: 8173 atacaaataaacacacaaa 8155
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>dbj|BS000079.1| Pan troglodytes chromosome 22 clone:RP43-047O12, map 22, complete
              sequences
          Length = 158933

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     atacaaataaacacacaaa 38
              |||||||||||||||||||
Sbjct: 106939 atacaaataaacacacaaa 106921
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>gb|AF175279.1|AF175279 Mus musculus neurotensin receptor 3 mRNA, complete cds
          Length = 2484

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   ggacagacggatggctgct 116
            |||||||||||||||||||
Sbjct: 2000 ggacagacggatggctgct 1982
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>gb|AC153433.6| Mus musculus 10 BAC RP23-69K22 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 200061

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    atgatgatacaaataaaca 32
             |||||||||||||||||||
Sbjct: 87556 atgatgatacaaataaaca 87574
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>dbj|AP000959.3| Homo sapiens genomic DNA, chromosome 21 clone:RP11-797G14, complete
             sequence
          Length = 201112

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    atacaaataaacacacaaa 38
             |||||||||||||||||||
Sbjct: 13242 atacaaataaacacacaaa 13224
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>dbj|AP001684.1| Homo sapiens genomic DNA, chromosome 21q, section 28/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     atacaaataaacacacaaa 38
              |||||||||||||||||||
Sbjct: 287438 atacaaataaacacacaaa 287420
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>gb|AC172744.2| Medicago truncatula chromosome 2 BAC clone mth2-33p17, complete
             sequence
          Length = 116124

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 66    acgtacaagtacacatgca 84
             |||||||||||||||||||
Sbjct: 23399 acgtacaagtacacatgca 23417
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>ref|NM_019972.2| Mus musculus sortilin 1 (Sort1), mRNA
          Length = 6804

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   ggacagacggatggctgct 116
            |||||||||||||||||||
Sbjct: 2003 ggacagacggatggctgct 1985
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>emb|AL954144.6| Zebrafish DNA sequence from clone CH211-206L15, complete sequence
          Length = 156893

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    ccgatggacagacggatgg 111
             |||||||||||||||||||
Sbjct: 91971 ccgatggacagacggatgg 91989
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>emb|CR848818.10| Zebrafish DNA sequence from clone DKEY-38O19 in linkage group 16,
             complete sequence
          Length = 208738

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    tgatacaaataaacacaca 36
             |||||||||||||||||||
Sbjct: 54675 tgatacaaataaacacaca 54693
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>gb|U59839.1|FHU59839 Fundulus heteroclitus lactate dehydrogenase-B (Ldh-B) gene, 5'UTR
          Length = 1113

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 8   tcgatgatgatgatacaaataaa 30
           ||||||||||||| |||||||||
Sbjct: 873 tcgatgatgatgacacaaataaa 851
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>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete
             sequence
          Length = 132775

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 98    ggacagacggatggctgct 116
             |||||||||||||||||||
Sbjct: 86844 ggacagacggatggctgct 86826
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>emb|AL672195.9| Mouse DNA sequence from clone RP23-468E16 on chromosome 9, complete
             sequence
          Length = 182503

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    atacaaataaacacacaaa 38
             |||||||||||||||||||
Sbjct: 13444 atacaaataaacacacaaa 13426
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>emb|AL663032.9| Mouse DNA sequence from clone RP23-27I6 on chromosome X, complete
              sequence
          Length = 162995

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 106    ggatggctgctaaacacatttaa 128
              |||||||||| ||||||||||||
Sbjct: 101941 ggatggctgccaaacacatttaa 101919


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,569,322
Number of Sequences: 3902068
Number of extensions: 1569322
Number of successful extensions: 129767
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129492
Number of HSP's gapped (non-prelim): 275
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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