>ATG3_EMENI (Q5AVG2) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme atg3)
          Length = 787

 Score = 30.0 bits (66), Expect = 1.8
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +1

Query: 7   DETYITHDLNVTRSKQKNLPPAPFHIIPPHWSLFIIQYNTDAP 135
           D T  TH+    R K +++P +PF ++PP   L I  Y  D P
Sbjct: 507 DSTTPTHN----RFKLQSMPESPFLLLPPELRLQIYSYVLDIP 545

>NUKC_MESVI (Q9MUR0) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 247

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 59  IYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPA 154
           I H L  +    TG YL+ S  QTPP SLS A
Sbjct: 198 IKHELTLSSPVYTGKYLNSSARQTPPRSLSEA 229

>ALDH2_BACSU (P39616) Probable aldehyde dehydrogenase ywdH (EC 1.2.1.3)|
          Length = 457

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 65  HPLHFTLSPLTGPYLSYSTIQTPPSSLSPAV 157
           +PL   LSPL G   + +T+   PS  +PAV
Sbjct: 117 YPLQLALSPLIGAIAAGNTVVLKPSEYTPAV 147

>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 24  TRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPR 152
           T S+  K   E S   S +  PP+ + +     +R P +PYPR
Sbjct: 614 TSSKGAKANPEPSFKASENGLPPTSIFLSPNEAFRSPAIPYPR 656

>UL16_VZVD (P09293) Gene 44 protein|
          Length = 363

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +1

Query: 37  VTRSKQKNLPPAPFHII 87
           +TR +Q NLPP  FH+I
Sbjct: 82  ITRPRQMNLPPKTFHVI 98

>TBP_XENLA (P27633) TATA-box-binding protein (TATA-box factor) (TATA-binding|
           factor) (TATA sequence-binding protein) (Transcription
           initiation factor TFIID TBP subunit)
          Length = 297

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 44  GANRRIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPA 154
           G   +++HP   T +PL G    Y +  TP + +SPA
Sbjct: 74  GQTPQLFHPQTLTTAPLPGNTPLYPSPITPMTPISPA 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,715,404
Number of Sequences: 219361
Number of extensions: 420188
Number of successful extensions: 1308
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 80,573,946
effective HSP length: 30
effective length of database: 73,993,116
effective search space used: 1775834784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)