ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet78f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC034110.13| Homo sapiens chromosome 18, clone RP11-111H3, complete sequence Length = 167954 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 199 tagttattttttgttgttttct 220 |||||||||||||||||||||| Sbjct: 141009 tagttattttttgttgttttct 140988
>emb|AL627127.20| Mouse DNA sequence from clone RP23-360O1 on chromosome 4, complete sequence Length = 188629 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 197 tctagttattttttgttgtttt 218 |||||||||||||||||||||| Sbjct: 127552 tctagttattttttgttgtttt 127573
>gb|AC147479.17| Mus musculus chromosome 17, clone RP24-178C19, complete sequence Length = 178820 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 200 agttattttttgttgttttct 220 ||||||||||||||||||||| Sbjct: 154381 agttattttttgttgttttct 154361
>gb|AC151292.2| Mus musculus BAC clone RP23-138P14 from chromosome 17, complete sequence Length = 216585 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 agttattttttgttgttttct 220 ||||||||||||||||||||| Sbjct: 79529 agttattttttgttgttttct 79549
>gb|AC113600.19| Mus musculus chromosome 6, clone RP23-110A19, complete sequence Length = 212705 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 agttattttttgttgttttcttctt 224 |||||||||||||||||| |||||| Sbjct: 36993 agttattttttgttgtttccttctt 36969
>gb|AC116130.15| Mus musculus chromosome 17, clone RP23-98F21, complete sequence Length = 228842 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 198151 tttttgttgttttcttcttgg 198171
>ref|XM_785201.1| PREDICTED: Strongylocentrotus purpuratus similar to guanine nucleotide binding protein-like 2 (nucleolar) (LOC585370), mRNA Length = 2328 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 68 tcctccatcatcgaacaccaa 88 ||||||||||||||||||||| Sbjct: 711 tcctccatcatcgaacaccaa 691
>emb|AL626770.9| Mouse DNA sequence from clone RP23-379J18 on chromosome 11 Contains a novel gene and a serine/arginine repetitive matrix 1 (Srrm1) pseudogene, complete sequence Length = 188854 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 41382 tttttgttgttttcttcttgg 41402
>gb|AF532114.1| Mus musculus strain 129/SvJ BAC clone citb544e14 from the MHC region, complete sequence Length = 153869 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 29740 tttttgttgttttcttcttgg 29720
>gb|AF532112.1| Mus musculus strain 129/SvJ BAC clone citb20h22 from the MHC region, complete sequence Length = 172199 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 124156 tttttgttgttttcttcttgg 124136
>gb|AF230340.1|AF230340 Mus musculus nuclear RNA polymerase I small specific subunit Rpa12 gene, complete cds Length = 4591 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 2253 tttttgttgttttcttcttgg 2273
>gb|AC005960.1|AC005960 Mus musculus chromosome 17 BAC citb20h22 from the MHC region, complete sequence Length = 158414 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 124138 tttttgttgttttcttcttgg 124118
>emb|Z81549.2|CEF55C9 Caenorhabditis elegans Cosmid F55C9, complete sequence Length = 29404 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 tattttttgttgttttcttct 223 ||||||||||||||||||||| Sbjct: 10274 tattttttgttgttttcttct 10294
>gb|AC145116.3| Mus musculus BAC clone RP23-434H14 from 6, complete sequence Length = 204134 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 200 agttattttttgttgttttcttctt 224 |||||||||||||||||| |||||| Sbjct: 203407 agttattttttgttgtttccttctt 203383
>emb|CR956641.9| Mouse DNA sequence from clone RP23-77N9 on chromosome 17, complete sequence Length = 202624 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 tttttgttgttttcttcttgg 226 ||||||||||||||||||||| Sbjct: 61646 tttttgttgttttcttcttgg 61666
>gb|AC170594.2| Mus musculus BAC clone RP24-425N5 from chromosome 17, complete sequence Length = 161769 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 agttattttttgttgttttct 220 ||||||||||||||||||||| Sbjct: 10508 agttattttttgttgttttct 10528
>emb|AL772292.10| Mouse DNA sequence from clone RP23-109C16 on chromosome 2, complete sequence Length = 201671 Score = 42.1 bits (21), Expect = 1.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 198 ctagttattttttgttgtttt 218 ||||||||||||||||||||| Sbjct: 108568 ctagttattttttgttgtttt 108588
>gb|AY846301.1| Armillariella tabescens clone EST2000177 unknown mRNA Length = 3416 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 cctctagttattttttgttg 214 |||||||||||||||||||| Sbjct: 1398 cctctagttattttttgttg 1417
>ref|NM_105060.1| Arabidopsis thaliana protein binding AT1G63850 mRNA, complete cds Length = 1647 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 1044 caagtacaacgactctttcctaagatca 1017
>gb|AY611148.1| Melanohalea olivacea voucher Vitikainen 16196 small subunit ribosomal RNA gene, partial sequence; mitochondrial Length = 911 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 616 ttttttgttgttttcttctt 635
>gb|AF411339.1| Homo sapiens brain-derived neurotrophic factor opposite strand (BDNFOS) gene, partial sequence; and brain-derived neurotrophic factor (BDNF) gene, complete cds Length = 115886 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 97003 gttattttttgttgttttct 96984
>gb|AC120859.12| Mus musculus chromosome 18, clone RP24-200D2, complete sequence Length = 184327 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gggaggagaggagagtttac 163 |||||||||||||||||||| Sbjct: 2258 gggaggagaggagagtttac 2239
>gb|AC172160.3| Pan troglodytes chromosome X clone PTB-96F20 map human otholog p11.4, complete sequence Length = 203345 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 156782 ttttttgttgttttcttctt 156801
>ref|NM_001039590.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X), transcript variant 3, mRNA Length = 12401 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 10381 ttttttgttgttttcttctt 10400
>ref|NM_001039591.1| Homo sapiens ubiquitin specific peptidase 9, X-linked (USP9X), transcript variant 4, mRNA Length = 12353 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 10333 ttttttgttgttttcttctt 10352
>gb|AY435216.1| Sus scrofa T-box 21 (TBX21) mRNA, partial cds Length = 200 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gttggggaggagaggagagt 159 |||||||||||||||||||| Sbjct: 58 gttggggaggagaggagagt 39
>ref|NM_170735.4| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 1, mRNA Length = 4247 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2340 gttattttttgttgttttct 2321
>ref|NM_170732.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 2, mRNA Length = 4084 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2177 gttattttttgttgttttct 2158
>ref|NM_170731.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 3, mRNA Length = 4044 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2137 gttattttttgttgttttct 2118
>ref|NM_170734.2| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 6, mRNA Length = 3958 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2051 gttattttttgttgttttct 2032
>ref|NM_170733.2| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 5, mRNA Length = 4016 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2109 gttattttttgttgttttct 2090
>ref|NM_001709.3| Homo sapiens brain-derived neurotrophic factor (BDNF), transcript variant 4, mRNA Length = 3972 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2065 gttattttttgttgttttct 2046
>gb|AC166570.2| Mus musculus chromosome 18, clone RP24-74O22, complete sequence Length = 163755 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gggaggagaggagagtttac 163 |||||||||||||||||||| Sbjct: 62225 gggaggagaggagagtttac 62244
>gb|DQ132236.1| Arabidopsis thaliana ecotype Bs-1 At5g63850 gene, partial cds Length = 807 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 783 caagtacaacgactctttcctaagatca 756
>gb|DQ132235.1| Arabidopsis thaliana ecotype Te-0 At5g63850 gene, partial cds Length = 807 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 783 caagtacaacgactctttcctaagatca 756
>gb|DQ132231.1| Arabidopsis thaliana ecotype Tu-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132230.1| Arabidopsis thaliana ecotype Cvi-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132229.1| Arabidopsis thaliana ecotype Nok-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132228.1| Arabidopsis thaliana ecotype Lisse-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132227.1| Arabidopsis thaliana ecotype Ler-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132226.1| Arabidopsis thaliana ecotype Ita-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132225.1| Arabidopsis thaliana ecotype Ma-2 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132224.1| Arabidopsis thaliana ecotype Bla-10 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132223.1| Arabidopsis thaliana ecotype Me-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132222.1| Arabidopsis thaliana ecotype Da (1)-12 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132221.1| Arabidopsis thaliana ecotype Kas-1 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>gb|DQ132220.1| Arabidopsis thaliana ecotype Ag-0 At5g63850 gene, partial cds Length = 808 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 784 caagtacaacgactctttcctaagatca 757
>emb|CT009551.8| Pig DNA sequence from clone CH242-214G8 on chromosome 17, complete sequence Length = 239237 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tagttattttttgttgtttt 218 |||||||||||||||||||| Sbjct: 47025 tagttattttttgttgtttt 47006
>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3, complete sequence Length = 104085 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ttttgttgttttcttcttgg 226 |||||||||||||||||||| Sbjct: 40136 ttttgttgttttcttcttgg 40155
>gb|AC130821.3| Mus musculus BAC clone RP23-205K12 from chromosome 13, complete sequence Length = 227411 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 gggaggagaggagagtttac 163 |||||||||||||||||||| Sbjct: 114433 gggaggagaggagagtttac 114452
>gb|AY368473.1| Sus scrofa isolate LWH006 natural resistance associated macrophage protein 1 (NRAMP1) gene, intron 6 and partial cds Length = 455 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 352 ttttttgttgttttcttctt 371
>gb|AF462604.1| Mus musculus HMG-L6 (Hmgl6), T2R6 (T2r6), and candidate taste receptor T2R4 (T2r4) genes, complete cds Length = 84503 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 67388 ttattttttgttgttttctt 67369
>gb|AC144644.3| Medicago truncatula clone mth2-14l3, complete sequence Length = 117645 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tagttattttttgttgtttt 218 |||||||||||||||||||| Sbjct: 67630 tagttattttttgttgtttt 67649 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 tagttattttttgttgtttt 218 |||||||||||||||||||| Sbjct: 67246 tagttattttttgttgtttt 67265
>emb|AL691455.20| Human DNA sequence from clone CTD-2411I11 on chromosome 10 Contains two CpG islands, complete sequence Length = 41452 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 tcctctagttattttttgttgttt 217 ||||||||||||||||| |||||| Sbjct: 19369 tcctctagttatttttttttgttt 19346
>emb|AL591214.8| Human DNA sequence from clone RP11-18I23 on chromosome 9 Contains part of one variant of the ROR2 gene for receptor tyrosine kinase-like orphan receptor 2, complete sequence Length = 66959 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 cacggaacaatcctccatca 77 |||||||||||||||||||| Sbjct: 17703 cacggaacaatcctccatca 17684
>emb|AL158047.9| Human DNA sequence from clone RP11-388B24 on chromosome 9 Contains a novel pseudogene, a novel gene, a DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 10 (RNA helicase) (HRH-J8) (DDX10) pseudogene and a ribosomal protein S2 (LLREP3) (RPS2) pseudogene, complete sequence Length = 201629 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tttttgttgttttcttcttg 225 |||||||||||||||||||| Sbjct: 6997 tttttgttgttttcttcttg 7016
>gb|AC087446.13| Homo sapiens chromosome 11, clone RP11-651M4, complete sequence Length = 167865 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 148979 gttattttttgttgttttct 148960
>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2 Contains the 5' end of a novel gene (KIAA0792), the LEFTB gene for left-right determination, factor B, the PYCR2 gene for pyrroline-5-carboxylate reductase family, member 2, the EBAF gene for endometrial bleeding associated factor (left-right determination, factor A; transforming growth factor beta superfamily), a novel gene, an NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa (NDUFA3) pseudogene and two CpG islands, complete sequence Length = 127736 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 80450 ttattttttgttgttttctt 80431
>emb|AL109797.18|HS1172N10 Human DNA sequence from clone RP5-1172N10 on chromosome Xp11.3-11.4 Contains the 3' end of the USP9X gene for X chromosome ubiquitin specific protease 9 (fat facets-like Drosophila), a novel gene and a CpG island, complete sequence Length = 129293 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 60229 ttttttgttgttttcttctt 60248
>gb|AC158633.7| Mus musculus 10 BAC RP23-407I4 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206282 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aaagagttggggaggagagg 154 |||||||||||||||||||| Sbjct: 182578 aaagagttggggaggagagg 182559
>emb|AL731792.12| Mouse DNA sequence from clone RP23-189P1 on chromosome 11 Contains the 5' end of a novel gene, the 3' end of the Spnb2 gene for spectrin beta 2 and a CpG island, complete sequence Length = 143722 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 attttttgttgttttcttct 223 |||||||||||||||||||| Sbjct: 12564 attttttgttgttttcttct 12545
>gb|AC079851.14| Homo sapiens 12 BAC RP11-349L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 82421 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 43890 ttattttttgttgttttctt 43871
>emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in linkage group 11, complete sequence Length = 209188 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 71142 ttattttttgttgttttctt 71123
>emb|CR859589.1| Pongo pygmaeus mRNA; cDNA DKFZp459O184 (from clone DKFZp459O184) Length = 3241 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 1823 ttattttttgttgttttctt 1804
>emb|BX470113.8| Zebrafish DNA sequence from clone DKEY-246M15 in linkage group 17, complete sequence Length = 118640 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 63786 gttattttttgttgttttct 63767
>gb|AC159910.6| Mus musculus 10 BAC RP23-353C6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 219861 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 aaagagttggggaggagagg 154 |||||||||||||||||||| Sbjct: 197420 aaagagttggggaggagagg 197439
>gb|AC023738.3| Drosophila melanogaster X BAC RP98-6F4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 103196 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 20444 ttttttgttgttttcttctt 20463
>gb|AC099569.2| Homo sapiens chromosome 1 clone RP5-1007M22, complete sequence Length = 126833 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 18149 gttattttttgttgttttct 18168
>gb|AY054400.2| Homo sapiens brain-derived neurotrophic factor BDNF6B (BDNF) mRNA, complete cds, alternatively spliced Length = 3957 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2050 gttattttttgttgttttct 2031
>gb|AY054399.2| Homo sapiens brain-derived neurotrophic factor BDNF6A (BDNF) mRNA, complete cds, alternatively spliced Length = 3856 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 1949 gttattttttgttgttttct 1930
>gb|AY054398.2| Homo sapiens brain-derived neurotrophic factor BDNF5 (BDNF) mRNA, complete cds, alternatively spliced Length = 3971 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2064 gttattttttgttgttttct 2045
>gb|AY054397.2| Homo sapiens brain-derived neurotrophic factor BDNF4 (BDNF) mRNA, complete cds, alternatively spliced Length = 3924 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2017 gttattttttgttgttttct 1998
>gb|AY054396.2| Homo sapiens brain-derived neurotrophic factor BDNF3 (BDNF) mRNA, complete cds, alternatively spliced Length = 3841 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 1934 gttattttttgttgttttct 1915
>gb|AY054395.2| Homo sapiens brain-derived neurotrophic factor BDNF2C (BDNF) mRNA, complete cds, alternatively spliced Length = 4083 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2176 gttattttttgttgttttct 2157
>gb|AY054394.2| Homo sapiens brain-derived neurotrophic factor BDNF2B (BDNF) mRNA, complete cds, alternatively spliced Length = 4000 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2093 gttattttttgttgttttct 2074
>gb|AY054393.2| Homo sapiens brain-derived neurotrophic factor BDNF2A (BDNF) mRNA, complete cds, alternatively spliced Length = 3786 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 1879 gttattttttgttgttttct 1860
>gb|AY054392.2| Homo sapiens brain-derived neurotrophic factor BDNF1 (BDNF) mRNA, complete cds, alternatively spliced Length = 4043 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 2136 gttattttttgttgttttct 2117
>gb|AC114785.5| Homo sapiens BAC clone RP11-607G14 from 2, complete sequence Length = 118022 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 gttattttttgttgttttcttctt 224 |||||||||| ||||||||||||| Sbjct: 80393 gttattttttattgttttcttctt 80370
>gb|AC010852.7|AC010852 Arabidopsis thaliana chromosome 1 BAC T12P18 genomic sequence, complete sequence Length = 79469 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 32 caagtacaacgactcattgctaagatca 59 ||||||||||||||| || ||||||||| Sbjct: 42607 caagtacaacgactctttcctaagatca 42634
>gb|AC140204.3| Mus musculus BAC clone RP24-342N5 from chromosome 6, complete sequence Length = 200130 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 99931 ttattttttgttgttttctt 99950
>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown, complete sequence Length = 159393 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 74036 ttattttttgttgttttctt 74017
>gb|AC012665.8| Homo sapiens BAC clone RP11-19E11 from 2, complete sequence Length = 126039 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 201 gttattttttgttgttttcttctt 224 |||||||||| ||||||||||||| Sbjct: 69444 gttattttttattgttttcttctt 69421
>gb|AC104563.14| Homo sapiens chromosome 11, clone RP11-587D21, complete sequence Length = 141200 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 gttattttttgttgttttct 220 |||||||||||||||||||| Sbjct: 77416 gttattttttgttgttttct 77435
>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome Length = 1358633 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 691782 ttattttttgttgttttctt 691801
>dbj|AP003515.1| Clostridium perfringens str. 13 plasmid pCP13 DNA, complete sequence Length = 54310 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 14 aactgacaataatatgtacaagta 37 ||||||||||||||| |||||||| Sbjct: 44575 aactgacaataatatttacaagta 44552
>dbj|AB001684.1| Chlorella vulgaris C-27 chloroplast DNA, complete sequence Length = 150613 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 87588 ttattttttgttgttttctt 87569
>gb|AC154790.2| Mus musculus BAC clone RP24-481A4 from 17, complete sequence Length = 194675 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 191706 ttattttttgttgttttctt 191725
>gb|AE003447.5| Drosophila melanogaster chromosome X, section 31 of 74 of the complete sequence Length = 288721 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 ttttttgttgttttcttctt 224 |||||||||||||||||||| Sbjct: 104288 ttttttgttgttttcttctt 104269
>emb|AL845473.7| Mouse DNA sequence from clone RP23-212E8 on chromosome 2, complete sequence Length = 189998 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 134393 ttattttttgttgttttctt 134412
>emb|BX004791.6| Mouse DNA sequence from clone RP24-233L10 on chromosome 4, complete sequence Length = 123244 Score = 40.1 bits (20), Expect = 4.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 200 agttattttttgttgttttcttct 223 |||| ||||||||||||||||||| Sbjct: 74196 agtttttttttgttgttttcttct 74219
>emb|CT033752.6| Mouse DNA sequence from clone RP23-140I20 on chromosome 17, complete sequence Length = 216455 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 202 ttattttttgttgttttctt 221 |||||||||||||||||||| Sbjct: 162325 ttattttttgttgttttctt 162344
>emb|AL136038.5|CNS01DVT Human chromosome 14 DNA sequence BAC C-2302E22 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 151930 Score = 40.1 bits (20), Expect = 4.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 ctagttattttttgttgttttcttcttg 225 |||||| |||||||||||||| |||||| Sbjct: 135250 ctagtttttttttgttgtttttttcttg 135223
>emb|AL606918.9| Mouse DNA sequence from clone RP23-327O13 on chromosome 4, complete sequence Length = 192787 Score = 40.1 bits (20), Expect = 4.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 199 tagttattttttgttgtttt 218 |||||||||||||||||||| Sbjct: 124634 tagttattttttgttgtttt 124615 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,608,844 Number of Sequences: 3902068 Number of extensions: 3608844 Number of successful extensions: 103581 Number of sequences better than 10.0: 93 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103405 Number of HSP's gapped (non-prelim): 176 length of query: 314 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 292 effective length of database: 17,147,199,772 effective search space: 5006982333424 effective search space used: 5006982333424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
