ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78e03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X56803.1|TAMRNAU T.aestivum L. mRNA for ubiquitin 54 1e-04
2emb|X56601.1|TAUBIQU Wheat mRNA for ubiquitin 54 1e-04
3emb|X74214.1|VCUBI1 V.carteri gene for polyubiquitin 48 0.007
4emb|Z24723.1|PCUBIQGNA P.chrysosporium ubiquitin gene, complete CDS 44 0.11
5gb|DQ116441.1| Gossypium hirsutum ubiquitin extension protein (U... 44 0.11
6emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chr... 44 0.11
7gb|AY433575.1| Aedes aegypti ASAP ID: 38415 ubiquitin mRNA sequence 42 0.45
8ref|XM_382132.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 42 0.45
9gb|AC124418.4| Mus musculus BAC clone RP24-318G17 from chromosom... 42 0.45
10gb|DQ086482.1| Triticum aestivum ubiquitin (Ubiq) mRNA, partial cds 42 0.45
11gb|AC102411.12| Mus musculus chromosome 18, clone RP24-374D7, co... 42 0.45
12gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, co... 42 0.45
13gb|M88684.1|AGLPOLYUBI Aglaothamnion neglectum ubiquitin mRNA, c... 42 0.45
14gb|AC136372.13| Mus musculus chromosome 15, clone RP23-232G24, c... 40 1.8
15gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome... 40 1.8
16gb|AY433652.1| Aedes aegypti ASAP ID: 38587 ubiquitin mRNA sequence 40 1.8
17gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, com... 40 1.8
18gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete ... 40 1.8
19gb|AC138715.3| Mus musculus BAC clone RP23-283E23 from chromosom... 40 1.8
20gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, comp... 40 1.8
21gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, comp... 40 1.8
22gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, comp... 40 1.8
23emb|X60826.1|CRUBI3 C.reinhardtii UBI3 mRNA for ubiquitin-fusion... 40 1.8
24gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosom... 40 1.8
25gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chrom... 40 1.8
26gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromoso... 40 1.8
27emb|X16824.1|CHOS225B Chinese hamster (mutant S225) aprt locus b... 40 1.8
28ref|NM_129327.3| Arabidopsis thaliana kinase AT2G37710 mRNA, com... 38 7.0
29gb|AC154641.2| Mus musculus BAC clone RP23-276C17 from chromosom... 38 7.0
30gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete... 38 7.0
31gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, co... 38 7.0
32gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome ... 38 7.0
33gb|AC121583.3| Mus musculus BAC clone RP23-259K16 from 13, compl... 38 7.0
34gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, com... 38 7.0
35emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 o... 38 7.0
36emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 o... 38 7.0
37emb|BX029122.1|CNS08UMU Single read from an extremity of a full-... 38 7.0
38emb|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section... 38 7.0
39emb|X95909.1|ATLECGENE A.thaliana mRNA for receptor like protein... 38 7.0
40gb|AY091070.1| Arabidopsis thaliana putative receptor protein ki... 38 7.0
41gb|BC040569.1| Homo sapiens elongation factor Tu GTP binding dom... 38 7.0
42gb|AC103870.3| Homo sapiens chromosome 11, clone RP11-702L21, co... 38 7.0
43gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 ma... 38 7.0
44gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, com... 38 7.0
45gb|AY099142.1| Cercomonas ATCC50316 isolate pub4 polyubiquitin g... 38 7.0
46gb|AY099139.1| Cercomonas ATCC50316 isolate pub1 polyubiquitin g... 38 7.0
47gb|AY101385.1| Cercomonas ATCC50316 polyubiquitin 7 (pub7) gene,... 38 7.0
48gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, co... 38 7.0
49gb|AC016595.4| Homo sapiens chromosome 5 clone CTD-2012M11, comp... 38 7.0
50gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35... 38 7.0
51gb|AF093504.1|AF093504 Saccharum hybrid cultivar H32-8560 tetra-... 38 7.0
52gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome 38 7.0
53emb|AL844486.12| Mouse DNA sequence from clone RP23-249P4 on chr... 38 7.0
54emb|AL773580.11| Mouse DNA sequence from clone RP23-26G3 on chro... 38 7.0
55emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chr... 38 7.0 
>emb|X56803.1|TAMRNAU T.aestivum L. mRNA for ubiquitin
          Length = 436

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 50/57 (87%), Gaps = 3/57 (5%)
 Strand = Plus / Minus

                                                                    
Query: 91  ttcatagttcaccaaagctgctgcgcac---cagaagttcaaagatacaaacgataa 144
           |||||||||||||||||||||| | |||   ||||||||  ||||||||||||||||
Sbjct: 425 ttcatagttcaccaaagctgctccacaccagcagaagtttgaagatacaaacgataa 369
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>emb|X56601.1|TAUBIQU Wheat mRNA for ubiquitin
          Length = 436

 Score = 54.0 bits (27), Expect = 1e-04
 Identities = 50/57 (87%), Gaps = 3/57 (5%)
 Strand = Plus / Minus

                                                                    
Query: 91  ttcatagttcaccaaagctgctgcgcac---cagaagttcaaagatacaaacgataa 144
           |||||||||||||||||||||| | |||   ||||||||  ||||||||||||||||
Sbjct: 425 ttcatagttcaccaaagctgctccacaccagcagaagtttgaagatacaaacgataa 369
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>emb|X74214.1|VCUBI1 V.carteri gene for polyubiquitin
          Length = 2619

 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 35   ggtgtccgaagactcgacctccag 58
            ||||||||||||||||||||||||
Sbjct: 2074 ggtgtccgaagactcgacctccag 2051



 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 35   ggtgtccgaagactcgacctccag 58
            ||||||||||||||||||||||||
Sbjct: 1722 ggtgtccgaagactcgacctccag 1699



 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 35   ggtgtccgaagactcgacctccag 58
            ||||||||||||||||||||||||
Sbjct: 1370 ggtgtccgaagactcgacctccag 1347



 Score = 48.1 bits (24), Expect = 0.007
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 35   ggtgtccgaagactcgacctccag 58
            ||||||||||||||||||||||||
Sbjct: 1018 ggtgtccgaagactcgacctccag 995
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>emb|Z24723.1|PCUBIQGNA P.chrysosporium ubiquitin gene, complete CDS
          Length = 2054

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 30   tcaaaggtgtccgaagactcgacctc 55
            |||| |||||||||||||||||||||
Sbjct: 1229 tcaatggtgtccgaagactcgacctc 1204



 Score = 42.1 bits (21), Expect = 0.45
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 27  ttatcaaaggtgtccgaagactcgacctc 55
           ||||||| |||||| ||||||||||||||
Sbjct: 726 ttatcaatggtgtcggaagactcgacctc 698
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>gb|DQ116441.1| Gossypium hirsutum ubiquitin extension protein (UBQ7) mRNA,
           complete cds
          Length = 752

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 30  tcaaaggtgtccgaagactcgacctc 55
           |||| |||||||||||||||||||||
Sbjct: 128 tcaatggtgtccgaagactcgacctc 103
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>emb|AL928883.19| Mouse DNA sequence from clone RP23-60E18 on chromosome 2, complete
             sequence
          Length = 208470

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 7     acagcaaacatcaggcagagtt 28
             ||||||||||||||||||||||
Sbjct: 12137 acagcaaacatcaggcagagtt 12116
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>gb|AY433575.1| Aedes aegypti ASAP ID: 38415 ubiquitin mRNA sequence
          Length = 280

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 35  ggtgtccgaagactcgacctccaga 59
           ||||||||||| |||||||||||||
Sbjct: 270 ggtgtccgaaggctcgacctccaga 246
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>ref|XM_382132.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein
          (FG01956.1) partial mRNA
          Length = 366

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                               
Query: 35 ggtgtccgaagactcgacctc 55
          |||||||||||||||||||||
Sbjct: 45 ggtgtccgaagactcgacctc 25
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>gb|AC124418.4| Mus musculus BAC clone RP24-318G17 from chromosome 18, complete
            sequence
          Length = 167998

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 118  ccagaagttcaaagatacaaa 138
            |||||||||||||||||||||
Sbjct: 9415 ccagaagttcaaagatacaaa 9395
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>gb|DQ086482.1| Triticum aestivum ubiquitin (Ubiq) mRNA, partial cds
          Length = 400

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 44/51 (86%), Gaps = 3/51 (5%)
 Strand = Plus / Minus

                                                              
Query: 97  gttcaccaaagctgctgcgcaccag---aagttcaaagatacaaacgataa 144
           |||||||||||||||| | ||||||   |||||  ||||||||||||||||
Sbjct: 400 gttcaccaaagctgctccacaccagcagaagtttgaagatacaaacgataa 350
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>gb|AC102411.12| Mus musculus chromosome 18, clone RP24-374D7, complete sequence
          Length = 171918

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 118   ccagaagttcaaagatacaaa 138
             |||||||||||||||||||||
Sbjct: 92379 ccagaagttcaaagatacaaa 92359
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>gb|AC161481.4| Mus musculus chromosome 18, clone RP23-336C20, complete sequence
          Length = 210643

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 118   ccagaagttcaaagatacaaa 138
             |||||||||||||||||||||
Sbjct: 17668 ccagaagttcaaagatacaaa 17688
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>gb|M88684.1|AGLPOLYUBI Aglaothamnion neglectum ubiquitin mRNA, complete cds
          Length = 1520

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 30  tcaaaggtgtccgaagactcgacctccag 58
           |||| |||||| |||||||||||||||||
Sbjct: 644 tcaatggtgtcagaagactcgacctccag 616



 Score = 42.1 bits (21), Expect = 0.45
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 30  tcaaaggtgtccgaagactcgacctccag 58
           |||| ||||||||| ||||||||||||||
Sbjct: 416 tcaatggtgtccgaggactcgacctccag 388



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 36  gtgtccgaagactcgacctccag 58
           |||||||| ||||||||||||||
Sbjct: 182 gtgtccgaggactcgacctccag 160
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>gb|AC136372.13| Mus musculus chromosome 15, clone RP23-232G24, complete sequence
          Length = 201204

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     acagcaaacatcaggcagag 26
             ||||||||||||||||||||
Sbjct: 43063 acagcaaacatcaggcagag 43044
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>gb|AC167359.4| Mus musculus BAC clone RP24-94F12 from chromosome 8, complete sequence
          Length = 176523

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     aacaaaacagcaaacatcag 20
             ||||||||||||||||||||
Sbjct: 53218 aacaaaacagcaaacatcag 53237
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>gb|AY433652.1| Aedes aegypti ASAP ID: 38587 ubiquitin mRNA sequence
          Length = 511

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 36  gtgtccgaagactcgacctccaga 59
           |||||||||| |||||||||||||
Sbjct: 217 gtgtccgaaggctcgacctccaga 194
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>gb|AC147073.2| Pan troglodytes BAC clone RP43-169D10 from 7, complete sequence
          Length = 159447

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     ctcacttatttttcatagtt 99
              ||||||||||||||||||||
Sbjct: 111194 ctcacttatttttcatagtt 111175
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>gb|AC002381.1| Homo sapiens BAC clone CTB-20D2 from 7, complete sequence
          Length = 172533

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    ctcacttatttttcatagtt 99
             ||||||||||||||||||||
Sbjct: 55047 ctcacttatttttcatagtt 55066
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>gb|AC138715.3| Mus musculus BAC clone RP23-283E23 from chromosome 15, complete
             sequence
          Length = 164806

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     acagcaaacatcaggcagag 26
             ||||||||||||||||||||
Sbjct: 47945 acagcaaacatcaggcagag 47964
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>gb|AC142331.1| Pan troglodytes BAC clone RP43-28J15 from 7, complete sequence
          Length = 140363

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    ctcacttatttttcatagtt 99
             ||||||||||||||||||||
Sbjct: 52422 ctcacttatttttcatagtt 52403
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>gb|AC145774.1| Pan troglodytes BAC clone RP43-160F1 from 7, complete sequence
          Length = 208178

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    ctcacttatttttcatagtt 99
             ||||||||||||||||||||
Sbjct: 55270 ctcacttatttttcatagtt 55251
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>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence
          Length = 171002

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    caaacatcaggcagagttat 30
             ||||||||||||||||||||
Sbjct: 93965 caaacatcaggcagagttat 93946
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>emb|X60826.1|CRUBI3 C.reinhardtii UBI3 mRNA for ubiquitin-fusion protein (UbCEP52)
          Length = 730

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 35 ggtgtccgaagactcgacctccag 58
          ||||||||||||||| ||||||||
Sbjct: 72 ggtgtccgaagactccacctccag 49
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>gb|AC160634.2| Mus musculus BAC clone RP23-429J21 from chromosome 12, complete sequence
          Length = 176160

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 5      aaacagcaaacatcaggcag 24
              ||||||||||||||||||||
Sbjct: 111411 aaacagcaaacatcaggcag 111392
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>gb|AC147976.3| Pan troglodytes BAC clone CH251-543E22 from chromosome 7, complete
              sequence
          Length = 231294

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 80     ctcacttatttttcatagtt 99
              ||||||||||||||||||||
Sbjct: 137652 ctcacttatttttcatagtt 137671
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>gb|AC167334.3| Gallus gallus BAC clone CH261-18C17 from chromosome unknown, complete
              sequence
          Length = 220538

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      aacaaaacagcaaacatcag 20
              ||||||||||||||||||||
Sbjct: 113973 aacaaaacagcaaacatcag 113954
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>emb|X16824.1|CHOS225B Chinese hamster (mutant S225) aprt locus breakpoint DNA
          Length = 770

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 1   aacaaaacagcaaacatcag 20
           ||||||||||||||||||||
Sbjct: 495 aacaaaacagcaaacatcag 476
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>ref|NM_129327.3| Arabidopsis thaliana kinase AT2G37710 mRNA, complete cds
          Length = 2287

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 123 agttcaaagatacaaacgataat 145
           ||||||| |||||||||||||||
Sbjct: 495 agttcaatgatacaaacgataat 517
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>gb|AC154641.2| Mus musculus BAC clone RP23-276C17 from chromosome 16, complete sequence
          Length = 190523

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 10     gcaaacatcaggcagagtt 28
              |||||||||||||||||||
Sbjct: 130770 gcaaacatcaggcagagtt 130752
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>gb|AC009744.8| Drosophila melanogaster clone BACR06G16, complete sequence
          Length = 179038

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 81    tcacttatttttcatagtt 99
             |||||||||||||||||||
Sbjct: 78059 tcacttatttttcatagtt 78041
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>gb|AC105330.8| Mus musculus chromosome 15, clone RP23-281C10, complete sequence
          Length = 206675

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 128   aaagatacaaacgataata 146
             |||||||||||||||||||
Sbjct: 14897 aaagatacaaacgataata 14879
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>gb|AC133967.2| Mus musculus BAC clone RP23-14J5 from chromosome 16, complete sequence
          Length = 195446

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gcaaacatcaggcagagtt 28
             |||||||||||||||||||
Sbjct: 28431 gcaaacatcaggcagagtt 28413
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>gb|AC121583.3| Mus musculus BAC clone RP23-259K16 from 13, complete sequence
          Length = 207129

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 91    ttcatagttcaccaaagctgctg 113
             |||||||||||||||| ||||||
Sbjct: 79647 ttcatagttcaccaaaactgctg 79669
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>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence
          Length = 249008

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 74     cctgggctcacttattttt 92
              |||||||||||||||||||
Sbjct: 157576 cctgggctcacttattttt 157558
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>emb|Z84481.1|HS440O21 Human DNA sequence from clone RP3-440O21 on chromosome X, complete
             sequence
          Length = 107677

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 1     aacaaaacagcaaacatca 19
             |||||||||||||||||||
Sbjct: 47339 aacaaaacagcaaacatca 47321
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>emb|Z81008.1|HS369O24 Human DNA sequence from clone RP3-369O24 on chromosome X Contains part
             of the ODZ1 gene for odz, odd Oz/ten-m homolog
             1(Drosophila), complete sequence
          Length = 110180

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 90    tttcatagttcaccaaagc 108
             |||||||||||||||||||
Sbjct: 32856 tttcatagttcaccaaagc 32838
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>emb|BX029122.1|CNS08UMU Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA43CB11 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 829

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 36  gtgtccgaagactcgacctccag 58
           |||||||| ||||||||||||||
Sbjct: 203 gtgtccgacgactcgacctccag 181
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>emb|Z99114.2|BSUB0011 Bacillus subtilis complete genome (section 11 of 21): from 2014895 to
              2207855
          Length = 192961

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 123    agttcaaagatacaaacga 141
              |||||||||||||||||||
Sbjct: 185469 agttcaaagatacaaacga 185451
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>emb|X95909.1|ATLECGENE A.thaliana mRNA for receptor like protein kinase
          Length = 2242

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 123 agttcaaagatacaaacgataat 145
           ||||||| |||||||||||||||
Sbjct: 475 agttcaatgatacaaacgataat 497
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>gb|AY091070.1| Arabidopsis thaliana putative receptor protein kinase (At2g37710)
           mRNA, complete cds
          Length = 2277

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 123 agttcaaagatacaaacgataat 145
           ||||||| |||||||||||||||
Sbjct: 495 agttcaatgatacaaacgataat 517
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>gb|BC040569.1| Homo sapiens elongation factor Tu GTP binding domain containing 1,
           mRNA (cDNA clone IMAGE:5267393)
          Length = 2636

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 82  cacttatttttcatagttc 100
           |||||||||||||||||||
Sbjct: 149 cacttatttttcatagttc 131
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>gb|AC103870.3| Homo sapiens chromosome 11, clone RP11-702L21, complete sequence
          Length = 182598

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 82    cacttatttttcatagttc 100
             |||||||||||||||||||
Sbjct: 31417 cacttatttttcatagttc 31435
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>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete
             sequence
          Length = 93845

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 123   agttcaaagatacaaacgataat 145
             ||||||| |||||||||||||||
Sbjct: 72576 agttcaatgatacaaacgataat 72554
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>gb|AC103873.2| Homo sapiens chromosome 11, clone RP11-768H8, complete sequence
          Length = 184860

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 82   cacttatttttcatagttc 100
            |||||||||||||||||||
Sbjct: 8250 cacttatttttcatagttc 8232
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>gb|AY099142.1| Cercomonas ATCC50316 isolate pub4 polyubiquitin gene, partial cds
          Length = 766

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 30  tcaaaggtgtccgaagactcgac 52
           |||| ||||||||||||||||||
Sbjct: 519 tcaatggtgtccgaagactcgac 497
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>gb|AY099139.1| Cercomonas ATCC50316 isolate pub1 polyubiquitin gene, partial cds
          Length = 532

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 30  tcaaaggtgtccgaagactcgac 52
           |||| ||||||||||||||||||
Sbjct: 519 tcaatggtgtccgaagactcgac 497
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>gb|AY101385.1| Cercomonas ATCC50316 polyubiquitin 7 (pub7) gene, partial cds
          Length = 532

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                 
Query: 30 tcaaaggtgtccgaagactcgac 52
          |||| ||||||||||||||||||
Sbjct: 51 tcaatggtgtccgaagactcgac 29
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>gb|AC026624.8| Homo sapiens chromosome 15, clone RP11-652P10, complete sequence
          Length = 143709

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 82     cacttatttttcatagttc 100
              |||||||||||||||||||
Sbjct: 127234 cacttatttttcatagttc 127252
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>gb|AC016595.4| Homo sapiens chromosome 5 clone CTD-2012M11, complete sequence
          Length = 131484

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 24    gagttatcaaaggtgtccgaaga 46
             ||||||||||||||||| |||||
Sbjct: 54032 gagttatcaaaggtgtctgaaga 54054
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>gb|AE003626.4| Drosophila melanogaster chromosome 2L, section 35 of 83 of the complete
              sequence
          Length = 264919

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 81     tcacttatttttcatagtt 99
              |||||||||||||||||||
Sbjct: 260289 tcacttatttttcatagtt 260271
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>gb|AF093504.1|AF093504 Saccharum hybrid cultivar H32-8560 tetra-ubiquitin (ubi4) gene,
            complete cds
          Length = 5551

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   ggtgtccgaagactcgacctcca 57
            ||||||||||||||| |||||||
Sbjct: 2324 ggtgtccgaagactccacctcca 2302
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>gb|AF020713.1|AF020713 Bacteriophage SPBc2 complete genome
          Length = 134416

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 123   agttcaaagatacaaacga 141
             |||||||||||||||||||
Sbjct: 85282 agttcaaagatacaaacga 85300
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>emb|AL844486.12| Mouse DNA sequence from clone RP23-249P4 on chromosome 2, complete
             sequence
          Length = 118787

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 10    gcaaacatcaggcagagtt 28
             |||||||||||||||||||
Sbjct: 46782 gcaaacatcaggcagagtt 46764
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>emb|AL773580.11| Mouse DNA sequence from clone RP23-26G3 on chromosome X, complete
            sequence
          Length = 210533

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 83   acttatttttcatagttca 101
            |||||||||||||||||||
Sbjct: 9783 acttatttttcatagttca 9765
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>emb|AL929473.7| Mouse DNA sequence from clone RP23-143P21 on chromosome 4, complete
             sequence
          Length = 59619

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 120   agaagttcaaagatacaaa 138
             |||||||||||||||||||
Sbjct: 31918 agaagttcaaagatacaaa 31936


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,637,545
Number of Sequences: 3902068
Number of extensions: 1637545
Number of successful extensions: 107923
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 107794
Number of HSP's gapped (non-prelim): 127
length of query: 147
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 126
effective length of database: 17,151,101,840
effective search space: 2161038831840
effective search space used: 2161038831840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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