ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide ... 256 1e-65
2emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlor... 163 2e-37
3emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide red... 117 9e-24
4gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosom... 40 1.6
5emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, ... 40 1.6
6ref|XM_968605.1| PREDICTED: Tribolium castaneum similar to Cytoc... 38 6.4
7emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in ... 38 6.4

>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR)
          Length = 1490

 Score =  256 bits (129), Expect = 1e-65
 Identities = 132/133 (99%)
 Strand = Plus / Minus

                                                                        
Query: 3    aggcctgcggttttattattccaatgtttgccgaaaattgtacatcttccacacgagatc 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 aggcctgcggttttattattccaatgtttgccgaaaattgtacatcttccacacgagatc 1418

                                                                        
Query: 63   tatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctactaaaaaggcg 122
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1417 tatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagcttctaaaaaggcg 1358

                         
Query: 123  taaacatgataat 135
            |||||||||||||
Sbjct: 1357 taaacatgataat 1345



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>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase
          Length = 1484

 Score =  163 bits (82), Expect = 2e-37
 Identities = 119/130 (91%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 6    cctgcggttttattattccaatgtttgccgaaaattgtacatcttccacacgagatctat 65
            |||||||||||||||||| |  ||| ||||||||||||||||||||||||||||||||| 
Sbjct: 1458 cctgcggttttattattc-atggttcgccgaaaattgtacatcttccacacgagatctac 1400

                                                                        
Query: 66   gcactctcgcggccactcgcaaggcctctcctgcgtaattgagctactaaaaaggcgtaa 125
            |||||||||| | |||||||||||||||||| ||||||||||| | ||||||||||||||
Sbjct: 1399 gcactctcgccgacactcgcaaggcctctcccgcgtaattgagtttctaaaaaggcgtaa 1340

                      
Query: 126  acatgataat 135
            | ||||||||
Sbjct: 1339 aaatgataat 1330



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>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
          Length = 1146

 Score =  117 bits (59), Expect = 9e-24
 Identities = 88/95 (92%), Gaps = 2/95 (2%)
 Strand = Plus / Minus

                                                                        
Query: 3    aggcctgcggttttattattccaatgttt-gccgaaaattgtacatcttccacacgagat 61
            |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct: 1135 aggcctgcggttttattattccaatggttcgccgaaaattgtacatcttccacccgagat 1076

                                               
Query: 62   ctatgcactctcgcggccactcgc-aaggcctctc 95
            ||||| |||| ||||| ||||||| ||||||||||
Sbjct: 1075 ctatgtactcccgcggacactcgcaaaggcctctc 1041



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>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
             sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 37    aaattgtacatcttccacac 56
             ||||||||||||||||||||
Sbjct: 24311 aaattgtacatcttccacac 24292



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>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence
          Length = 176196

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ttttattattccaatgtttg 32
              ||||||||||||||||||||
Sbjct: 105180 ttttattattccaatgtttg 105199



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>ref|XM_968605.1| PREDICTED: Tribolium castaneum similar to Cytochrome P450 4c3
           (CYPIVC3) (LOC662514), mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 18  ttattccaatgtttgccgaaaat 40
           ||||||| |||||||||||||||
Sbjct: 476 ttattcccatgtttgccgaaaat 454



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>emb|BX248104.5| Zebrafish DNA sequence from clone DKEY-77P13 in linkage group 20,
             complete sequence
          Length = 139851

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    ttttattattccaatgttt 31
             |||||||||||||||||||
Sbjct: 92684 ttttattattccaatgttt 92702


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 876,630
Number of Sequences: 3902068
Number of extensions: 876630
Number of successful extensions: 56094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56084
Number of HSP's gapped (non-prelim): 8
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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