ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene 250 8e-64
2emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid tra... 161 6e-37
3emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene 76 3e-11
4gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt... 76 3e-11
5emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA 74 1e-10
6emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for ... 66 3e-08
7emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific l... 66 3e-08
8gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein ... 60 2e-06
9emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non sp... 58 6e-06
10emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non sp... 58 6e-06
11emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on ch... 42 0.38
12gb|AF548001.1| Homo sapiens thioredoxin (TXN) gene, complete cds 42 0.38
13gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein ... 42 0.38
14emb|X54541.1|HSTRXE4E5 H.sapiens Trx gene for thioredoxin, exon ... 42 0.38
15emb|X70288.1|HSTHDC H.sapiens gene for thioredoxin, exons 4 and 5 42 0.38
16gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, com... 40 1.5
17gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosom... 40 1.5
18gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete s... 40 1.5
19emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on ch... 40 1.5
20gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete s... 40 1.5
21gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, comple... 40 1.5
22gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, comple... 40 1.5
23gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 1.5
24gb|AC148962.4| Atelerix albiventris clone LB4-372K23, complete s... 40 1.5
25gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complet... 40 1.5
26gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, com... 38 6.0
27gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome... 38 6.0
28gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, co... 38 6.0
29gb|AC117780.5| Mus musculus chromosome 16, clone RP24-540H15, co... 38 6.0
30gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, ... 38 6.0
31gb|AC147922.2| Xenopus tropicalis clone CH216-98P3, complete seq... 38 6.0
32gb|AC153594.15| Mus musculus 10 BAC RP23-98N14 (Roswell Park Can... 38 6.0
33gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Canc... 38 6.0
34gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 6.0
35gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genom... 38 6.0
36gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 38 6.0
37emb|BX927092.21| Zebrafish DNA sequence from clone CH211-69I15 i... 38 6.0
38gb|AF094425.1| Sium latifolium ribosomal protein L16 (rpl16) gen... 38 6.0
39gb|AF094355.1| Chaerophyllum khorassanicum ribosomal protein L16... 38 6.0
40gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome... 38 6.0
41gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosom... 38 6.0
42ref|XM_646379.1| Entamoeba histolytica HM-1:IMSS hypothetical pr... 38 6.0
43gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, comple... 38 6.0
44gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, comple... 38 6.0
45gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, comple... 38 6.0
46emb|AL596323.10| Human DNA sequence from clone RP11-83O12 on chr... 38 6.0
47emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on ch... 38 6.0
48emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on ch... 38 6.0
49emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on ch... 38 6.0
50gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosom... 38 6.0
51emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-02... 38 6.0
52gb|AC011722.6| Homo sapiens chromosome 18, clone RP11-217N19, co... 38 6.0
53gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9,... 38 6.0
54gb|AC145766.1| Cicer arietinum strain FLIP84-92C clone gl1-4m10,... 38 6.0
55gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, co... 38 6.0
56gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, com... 38 6.0
57gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Par... 38 6.0
58gb|AC092183.6| Homo sapiens 12p BAC RP11-6K23 (Roswell Park Canc... 38 6.0
59gb|AC010414.8| Homo sapiens chromosome 5 clone CTD-2169P11, comp... 38 6.0
60dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
61dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
62dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
63gb|AF150037.1|AF150037 Dermacentor variabilis 12S small ribosoma... 38 6.0
64gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Canc... 38 6.0
65gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C... 38 6.0
66gb|AC009474.4| Homo sapiens BAC clone RP11-179G23 from 2, comple... 38 6.0
67dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.0
68gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, compl... 38 6.0
69dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CT... 38 6.0
70gb|U95869.1|DVU95869 Dermacentor variabilis 12S ribosomal RNA ge... 38 6.0
71gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.0
72emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa... 38 6.0
73gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, comple... 38 6.0
74emb|AL450269.10| Human DNA sequence from clone RP11-131I7 on chr... 38 6.0
75gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Can... 38 6.0
76gb|AC167231.12| Mus musculus BAC RP23-416P12 (Roswell Park Canc... 38 6.0
77emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on ch... 38 6.0
78dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 38 6.0 
>emb|Z66528.1|HVGLTP4X3 H.vulgare ltp4.3 gene
          Length = 1862

 Score =  250 bits (126), Expect = 8e-64
 Identities = 126/126 (100%)
 Strand = Plus / Minus

                                                                        
Query: 1    agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactcacg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactcacg 1617

                                                                        
Query: 61   attcctctcaaaggaagtaaatattaattataacatcgatacaacagtgtgccggccatg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 attcctctcaaaggaagtaaatattaattataacatcgatacaacagtgtgccggccatg 1557

                  
Query: 121  cagagc 126
            ||||||
Sbjct: 1556 cagagc 1551
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>emb|Z37115.1|HVLTPPB H.vulgare (clone pKG285) mRNA for lipid transfer protein precursor
          Length = 691

 Score =  161 bits (81), Expect = 6e-37
 Identities = 106/114 (92%), Gaps = 4/114 (3%)
 Strand = Plus / Minus

                                                                       
Query: 17  catatatcaaaagtgcacatggtacaaagtacaacaaactcacgattcctctcaaaggaa 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 catatatcaaaagtgcacatggtacaaagtacaacaaactcacgattcctctcaaaggaa 599

                                                                 
Query: 77  gtaaatattaatta----taacatcgatacaacagtgtgccggccatgcagagc 126
           |||||||| |||||    ||||||||||||||||| |||  |||||||||||||
Sbjct: 598 gtaaatataaattataattaacatcgatacaacagagtgttggccatgcagagc 545
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>emb|Z66529.1|HVGLTP4X9 H.vulgare Ltp4.2 gene
          Length = 1567

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 1    agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactca 58
            |||||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 1278 agctgagtgtatgatccatatatcaacagtgcacatgttacaaagtacaataaactca 1221
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>gb|U63993.1|HVU63993 Hordeum vulgare lipid transfer protein (blt4.9) gene, complete cds
          Length = 3238

 Score = 75.8 bits (38), Expect = 3e-11
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 1    agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactca 58
            |||||||| |||||| |||||||||| |||||||||| |||||||||||| |||||||
Sbjct: 2674 agctgagtgtatgatccatatatcaacagtgcacatgttacaaagtacaataaactca 2617
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>emb|X68654.1|HVCW21 H.vulgare Cw-21 mRNA
          Length = 705

 Score = 73.8 bits (37), Expect = 1e-10
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 1   agctgagtatatgatacatatatcaaaagtgcacatggtacaaagtacaacaaactc 57
           |||||||| |||||| |||||||||| ||||||||||||||||| ||||| ||||||
Sbjct: 692 agctgagtgtatgattcatatatcaacagtgcacatggtacaaaatacaataaactc 636
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>emb|AJ784903.1| Triticum turgidum subsp. durum partial mRNA for type 1 non-specific
           lipid transfer protein precursor (ltp9.2 gene)
          Length = 604

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 17  catatatcaaaagtgcacatggtacaaagtacaacaaactc 57
           |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 577 catatatcaaaagtacacatggtacaaagtacagcaaactc 537



 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 92  aacatcgatacaacagtgt-gccggccatgcagagc 126
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 516 aacatcgatacaacagtgtggccggccatgcagagc 481
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>emb|AJ784901.1| Triticum aestivum mRNA for type 1 non-specific lipid transfer
           protein precursor (ltp9.2 gene)
          Length = 708

 Score = 65.9 bits (33), Expect = 3e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 17  catatatcaaaagtgcacatggtacaaagtacaacaaactc 57
           |||||||||||||| |||||||||||||||||| |||||||
Sbjct: 680 catatatcaaaagtacacatggtacaaagtacagcaaactc 640



 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                               
Query: 92  aacatcgatacaacagtgt-gccggccatgcagagc 126
           ||||||||||||||||||| ||||||||||||||||
Sbjct: 619 aacatcgatacaacagtgtggccggccatgcagagc 584
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>gb|AF302788.1|AF302788 Triticum aestivum lipid transfer protein precursor (LTP1) mRNA,
           complete cds
          Length = 737

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 30/30 (100%)
 Strand = Plus / Minus

                                         
Query: 28  agtgcacatggtacaaagtacaacaaactc 57
           ||||||||||||||||||||||||||||||
Sbjct: 679 agtgcacatggtacaaagtacaacaaactc 650
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>emb|AJ852556.1| Triticum aestivum ltp9.2d gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2087

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 17   catatatcaaaagtgcacatggtacaaagtaca 49
            |||||||||||||| ||||||||||||||||||
Sbjct: 1868 catatatcaaaagtacacatggtacaaagtaca 1836



 Score = 48.1 bits (24), Expect = 0.006
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   aacatcgatacaacagtgtg-ccggccatgcagagc 126
            |||||||||| ||||||||| |||||||||||||||
Sbjct: 1807 aacatcgatataacagtgtggccggccatgcagagc 1772
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>emb|AJ852555.1| Triticum aestivum ltp9.2c gene for type 1 non specific lipid transfer
            protein precursor
          Length = 2122

 Score = 58.0 bits (29), Expect = 6e-06
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 17   catatatcaaaagtgcacatggtacaaagtaca 49
            |||||||||||||| ||||||||||||||||||
Sbjct: 1880 catatatcaaaagtacacatggtacaaagtaca 1848



 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 35/36 (97%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 92   aacatcgatacaacagtgt-gccggccatgcagagc 126
            ||||||||||||||||||| ||||||||||||||||
Sbjct: 1819 aacatcgatacaacagtgtggccggccatgcagagc 1784
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>emb|AL158158.14| Human DNA sequence from clone RP11-427L11 on chromosome 9q31.2-32
            Contains the TXN gene for thioredoxin, the gene for a
            novel protein similar to thioredoxin, the 3' end of the
            gene for the likely ortholog of mouse polydom (POLYDOM)
            and two CpG islands, complete sequence
          Length = 194835

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 68   tcaaaggaagtaaatattaat 88
            |||||||||||||||||||||
Sbjct: 9384 tcaaaggaagtaaatattaat 9364
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>gb|AF548001.1| Homo sapiens thioredoxin (TXN) gene, complete cds
          Length = 15100

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    tcaaaggaagtaaatattaat 88
             |||||||||||||||||||||
Sbjct: 12943 tcaaaggaagtaaatattaat 12963
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>gb|AF334185.1|AF334185 Triticum aestivum lipid transfer protein precursor (LTP2) mRNA,
           complete cds
          Length = 730

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 33  acatggtacaaagtacaacaaactc 57
           |||| ||||||||||||||||||||
Sbjct: 680 acatcgtacaaagtacaacaaactc 656
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>emb|X54541.1|HSTRXE4E5 H.sapiens Trx gene for thioredoxin, exon 4 and exon 5
          Length = 1404

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 68 tcaaaggaagtaaatattaat 88
          |||||||||||||||||||||
Sbjct: 60 tcaaaggaagtaaatattaat 80
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>emb|X70288.1|HSTHDC H.sapiens gene for thioredoxin, exons 4 and 5
          Length = 1394

 Score = 42.1 bits (21), Expect = 0.38
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 68 tcaaaggaagtaaatattaat 88
          |||||||||||||||||||||
Sbjct: 31 tcaaaggaagtaaatattaat 51
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>gb|AC105067.8| Mus musculus chromosome 18, clone RP23-232D3, complete sequence
          Length = 186258

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ggaagtaaatattaattata 92
             ||||||||||||||||||||
Sbjct: 19775 ggaagtaaatattaattata 19794
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>gb|AC141628.2| Mus musculus BAC clone RP24-358E15 from chromosome 18, complete
             sequence
          Length = 170129

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 73    ggaagtaaatattaattata 92
             ||||||||||||||||||||
Sbjct: 23067 ggaagtaaatattaattata 23048
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>gb|AC144402.2| Atelerix albiventris clone LBNL4-89B6, complete sequence
          Length = 161430

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    aagtgcacatggtacaaagtacaa 50
             ||||||||||||||||||| ||||
Sbjct: 70159 aagtgcacatggtacaaagcacaa 70182
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>emb|AL356305.11| Human DNA sequence from clone RP11-109K20 on chromosome 13, complete
             sequence
          Length = 132436

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    aaggaagtaaatattaatta 90
             ||||||||||||||||||||
Sbjct: 74392 aaggaagtaaatattaatta 74373
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>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence
          Length = 150117

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    aagtgcacatggtacaaagtacaa 50
             ||||||||||||||||||| ||||
Sbjct: 66671 aagtgcacatggtacaaagcacaa 66694
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>gb|AC110774.3| Homo sapiens BAC clone RP11-254A24 from 4, complete sequence
          Length = 121016

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tcctctcaaaggaagtaaat 82
             ||||||||||||||||||||
Sbjct: 18205 tcctctcaaaggaagtaaat 18186
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>gb|AC021183.6| Homo sapiens BAC clone RP11-737D22 from 4, complete sequence
          Length = 118837

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    agtaaatattaattataaca 95
             ||||||||||||||||||||
Sbjct: 82647 agtaaatattaattataaca 82628
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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 27      aagtgcacatggtacaaagtacaa 50
               ||||||||||||||||||| ||||
Sbjct: 1753936 aagtgcacatggtacaaagcacaa 1753959
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>gb|AC148962.4| Atelerix albiventris clone LB4-372K23, complete sequence
          Length = 54256

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    aagtgcacatggtacaaagtacaa 50
             ||||||||||||||||||| ||||
Sbjct: 24977 aagtgcacatggtacaaagcacaa 25000
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>gb|AC131741.4| Mus musculus BAC clone RP23-66E21 from 7, complete sequence
          Length = 193738

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    attcctctcaaaggaagtaa 80
             ||||||||||||||||||||
Sbjct: 83149 attcctctcaaaggaagtaa 83130
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>gb|AC161108.2| Mus musculus chromosome 1, clone RP23-224G12, complete sequence
          Length = 207067

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gatacatatatcaaaagtg 31
             |||||||||||||||||||
Sbjct: 61956 gatacatatatcaaaagtg 61974
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>gb|AC135500.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0034J04
             map S1466, complete sequence
          Length = 140012

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 9     atatgatacatatatcaaa 27
             |||||||||||||||||||
Sbjct: 41182 atatgatacatatatcaaa 41200
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>gb|AC113039.10| Mus musculus chromosome 1, clone RP23-229P20, complete sequence
          Length = 172732

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 13     gatacatatatcaaaagtg 31
              |||||||||||||||||||
Sbjct: 136489 gatacatatatcaaaagtg 136471
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>gb|AC117780.5| Mus musculus chromosome 16, clone RP24-540H15, complete sequence
          Length = 153703

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 61    attcctctcaaaggaagta 79
             |||||||||||||||||||
Sbjct: 22838 attcctctcaaaggaagta 22856
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>gb|AC186394.1| Pan troglodytes chromosome 7 clone CH251-302F10, complete sequence
          Length = 183782

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     agtaaatattaattataac 94
              |||||||||||||||||||
Sbjct: 177929 agtaaatattaattataac 177947
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>gb|AC147922.2| Xenopus tropicalis clone CH216-98P3, complete sequence
          Length = 171597

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    atatatcaaaagtgcacat 36
             |||||||||||||||||||
Sbjct: 57603 atatatcaaaagtgcacat 57585
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>gb|AC153594.15| Mus musculus 10 BAC RP23-98N14 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 208555

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 8      tatatgatacatatatcaaaagt 30
              |||||||||||||||| ||||||
Sbjct: 174158 tatatgatacatatataaaaagt 174180
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>gb|AC144530.11| Homo sapiens 3 BAC RP11-237O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 42344

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    tggtacaaagtacaacaaa 54
             |||||||||||||||||||
Sbjct: 29660 tggtacaaagtacaacaaa 29642
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 9        atatgatacatatatcaaa 27
                |||||||||||||||||||
Sbjct: 22771251 atatgatacatatatcaaa 22771269
to top
>gb|AC135501.4| Oryza sativa chromosome 3 BAC OSJNBb0011J16 genomic sequence, complete
              sequence
          Length = 124170

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      atatgatacatatatcaaa 27
              |||||||||||||||||||
Sbjct: 108914 atatgatacatatatcaaa 108932
to top
>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    agtaaatattaattataac 94
             |||||||||||||||||||
Sbjct: 55730 agtaaatattaattataac 55712
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>emb|BX927092.21| Zebrafish DNA sequence from clone CH211-69I15 in linkage group 1,
             complete sequence
          Length = 108803

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 20    atatcaaaagtgcacatgg 38
             |||||||||||||||||||
Sbjct: 79048 atatcaaaagtgcacatgg 79030
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>gb|AF094425.1| Sium latifolium ribosomal protein L16 (rpl16) gene, intron;
           chloroplast gene for chloroplast product
          Length = 918

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 78  taaatattaattataacat 96
           |||||||||||||||||||
Sbjct: 223 taaatattaattataacat 205
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>gb|AF094355.1| Chaerophyllum khorassanicum ribosomal protein L16 (rpl16) gene,
           intron; chloroplast gene for chloroplast product
          Length = 899

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 78  taaatattaattataacat 96
           |||||||||||||||||||
Sbjct: 198 taaatattaattataacat 180
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>gb|AC126933.3| Mus musculus BAC clone RP24-117M7 from chromosome 1, complete
            sequence
          Length = 170885

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 33   acatggtacaaagtacaac 51
            |||||||||||||||||||
Sbjct: 7240 acatggtacaaagtacaac 7222
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>gb|AC122264.3| Mus musculus BAC clone RP23-197G20 from chromosome 12, complete sequence
          Length = 199646

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 9      atatgatacatatatcaaa 27
              |||||||||||||||||||
Sbjct: 106997 atatgatacatatatcaaa 107015
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>ref|XM_646379.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (163.t00010)
            partial mRNA
          Length = 1260

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   caaaggaagtaaatattaa 87
            |||||||||||||||||||
Sbjct: 1015 caaaggaagtaaatattaa 997
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>gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, complete sequence
          Length = 120984

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 76     agtaaatattaattataac 94
              |||||||||||||||||||
Sbjct: 114335 agtaaatattaattataac 114353
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>gb|AC072063.5| Homo sapiens BAC clone RP11-697B15 from 7, complete sequence
          Length = 136286

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 78  taaatattaattataacat 96
           |||||||||||||||||||
Sbjct: 940 taaatattaattataacat 922
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>gb|AC092485.6| Homo sapiens BAC clone RP11-272P13 from 7, complete sequence
          Length = 121142

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 78   taaatattaattataacat 96
            |||||||||||||||||||
Sbjct: 1061 taaatattaattataacat 1079
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>emb|AL596323.10| Human DNA sequence from clone RP11-83O12 on chromosome 9p13.3-21
             Contains part of the 5' UTR of a novel gene (FLJ31810),
             complete sequence
          Length = 91495

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    agtaaatattaattataac 94
             |||||||||||||||||||
Sbjct: 61638 agtaaatattaattataac 61620
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>emb|AL445489.10| Human DNA sequence from clone RP11-230L22 on chromosome 9 Contains the 3'
              end of a gene for a novel delta-notch like protein
              (FLJ38464), the 5' end of the gene for a novel protein
              (KIAA1608), a novel gene and two CpG islands, complete
              sequence
          Length = 175869

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 75     aagtaaatattaattataa 93
              |||||||||||||||||||
Sbjct: 118524 aagtaaatattaattataa 118542
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>emb|AL359915.14| Human DNA sequence from clone RP11-418J17 on chromosome 1 Contains the 3'
              end of a novel gene, a ribosomal protein L6 (RPL6)
              pseudogene and the 5' end of a novel gene, complete
              sequence
          Length = 159158

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 74     gaagtaaatattaattata 92
              |||||||||||||||||||
Sbjct: 155040 gaagtaaatattaattata 155058
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>emb|AL359762.24| Human DNA sequence from clone RP11-118B23 on chromosome 1 Contains the
             3' end of the gene for RNA processing factor 1 (RPF1), the
             GNG5 gene for guanine nucleotide binding protein (G
             protein), gamma 5, the SPATA1 gene for spermatogenesis
             associated 1, the CTBS gene for chitobiase, di-N-acetyl-
             and a CpG island, complete sequence
          Length = 125565

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    agtaaatattaattataac 94
             |||||||||||||||||||
Sbjct: 56104 agtaaatattaattataac 56086
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>gb|AC164610.3| Mus musculus BAC clone RP23-422D16 from chromosome 6, complete sequence
          Length = 200529

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 8      tatatgatacatatatcaa 26
              |||||||||||||||||||
Sbjct: 196715 tatatgatacatatatcaa 196697
to top
>emb|CR937025.1|PT027O15 Pan troglodytes chromosome 11 BAC PTB-027O15, complete sequence
          Length = 155399

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 8     tatatgatacatatatcaa 26
             |||||||||||||||||||
Sbjct: 52792 tatatgatacatatatcaa 52774
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>gb|AC011722.6| Homo sapiens chromosome 18, clone RP11-217N19, complete sequence
          Length = 27033

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   atatatcaaaagtgcacat 36
            |||||||||||||||||||
Sbjct: 2766 atatatcaaaagtgcacat 2784
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>gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9, complete sequence
          Length = 45868

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    ggtacaaagtacaacaaac 55
             |||||||||||||||||||
Sbjct: 15347 ggtacaaagtacaacaaac 15329
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>gb|AC145766.1| Cicer arietinum strain FLIP84-92C clone gl1-4m10, complete sequence
          Length = 10565

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 37  ggtacaaagtacaacaaac 55
           |||||||||||||||||||
Sbjct: 413 ggtacaaagtacaacaaac 395
to top
>gb|AC114688.3| Homo sapiens chromosome 18, clone RP11-316J22, complete sequence
          Length = 166525

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 18   atatatcaaaagtgcacat 36
            |||||||||||||||||||
Sbjct: 8634 atatatcaaaagtgcacat 8652
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>gb|AC073174.5| Homo sapiens chromosome 10 clone RP11-319F12, complete sequence
          Length = 161551

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    aaatattaattataacatc 97
             |||||||||||||||||||
Sbjct: 32868 aaatattaattataacatc 32886
to top
>gb|AC007542.3| Homo sapiens 12p12 BAC RPCI11-320J20 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 162081

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    gcacatggtacaaagtaca 49
             |||||||||||||||||||
Sbjct: 31073 gcacatggtacaaagtaca 31091
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>gb|AC092183.6| Homo sapiens 12p BAC RP11-6K23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 160015

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    gcacatggtacaaagtaca 49
             |||||||||||||||||||
Sbjct: 12507 gcacatggtacaaagtaca 12489
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>gb|AC010414.8| Homo sapiens chromosome 5 clone CTD-2169P11, complete sequence
          Length = 145156

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 71    aaggaagtaaatattaattataa 93
             |||||||||||||||||| ||||
Sbjct: 16991 aaggaagtaaatattaatgataa 16969
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 59      cgattcctctcaaaggaag 77
               |||||||||||||||||||
Sbjct: 8524346 cgattcctctcaaaggaag 8524328
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 9        atatgatacatatatcaaa 27
                |||||||||||||||||||
Sbjct: 22764279 atatgatacatatatcaaa 22764297
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 9      atatgatacatatatcaaa 27
              |||||||||||||||||||
Sbjct: 476331 atatgatacatatatcaaa 476313
to top
>gb|AF150037.1|AF150037 Dermacentor variabilis 12S small ribosomal RNA gene, partial
          sequence; mitochondrial gene for mitochondrial product
          Length = 337

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 75 aagtaaatattaattataa 93
          |||||||||||||||||||
Sbjct: 24 aagtaaatattaattataa 42
to top
>gb|AC157095.9| Mus musculus 6 BAC RP24-350P11 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 177800

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 8      tatatgatacatatatcaaaagt 30
              |||||||||||||||| ||||||
Sbjct: 167855 tatatgatacatatataaaaagt 167833
to top
>gb|AC084165.1|AC084165 Arabidopsis thaliana chromosome 1 BAC F3C3 genomic sequence, complete
             sequence
          Length = 90132

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     tatatgatacatatatcaa 26
             |||||||||||||||||||
Sbjct: 53459 tatatgatacatatatcaa 53477
to top
>gb|AC009474.4| Homo sapiens BAC clone RP11-179G23 from 2, complete sequence
          Length = 168651

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 4   tgagtatatgatacatatatcaa 26
           ||||||||| |||||||||||||
Sbjct: 506 tgagtatataatacatatatcaa 528
to top
>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0017C12
          Length = 135356

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     atatgatacatatatcaaa 27
             |||||||||||||||||||
Sbjct: 72572 atatgatacatatatcaaa 72554
to top
>gb|AC154777.2| Mus musculus BAC clone RP24-459H24 from 14, complete sequence
          Length = 155730

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 73    ggaagtaaatattaattataaca 95
             ||||||||||| |||||||||||
Sbjct: 48303 ggaagtaaataataattataaca 48281
to top
>dbj|AP002748.4| Homo sapiens genomic DNA, chromosome 11 clone:CTD-3074O7, complete
              sequence
          Length = 176017

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     gtgcacatggtacaaagta 47
              |||||||||||||||||||
Sbjct: 163107 gtgcacatggtacaaagta 163089
to top
>gb|U95869.1|DVU95869 Dermacentor variabilis 12S ribosomal RNA gene, mitochondrial gene
          for mitochondrial RNA, partial sequence
          Length = 397

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 75 aagtaaatattaattataa 93
          |||||||||||||||||||
Sbjct: 44 aagtaaatattaattataa 62
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 59      cgattcctctcaaaggaag 77
               |||||||||||||||||||
Sbjct: 8524229 cgattcctctcaaaggaag 8524211
to top
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     cgattcctctcaaaggaag 77
              |||||||||||||||||||
Sbjct: 131009 cgattcctctcaaaggaag 130991
to top
>gb|AC132589.4| Mus musculus BAC clone RP24-258M24 from 1, complete sequence
          Length = 168097

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     acatggtacaaagtacaac 51
              |||||||||||||||||||
Sbjct: 144799 acatggtacaaagtacaac 144781
to top
>emb|AL450269.10| Human DNA sequence from clone RP11-131I7 on chromosome 10, complete
             sequence
          Length = 49480

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 79    aaatattaattataacatc 97
             |||||||||||||||||||
Sbjct: 43433 aaatattaattataacatc 43415
to top
>gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 175513

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 82    tattaattataacatcgat 100
             |||||||||||||||||||
Sbjct: 93430 tattaattataacatcgat 93412
to top
>gb|AC167231.12| Mus musculus  BAC RP23-416P12 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 205781

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 82     tattaattataacatcgat 100
              |||||||||||||||||||
Sbjct: 179071 tattaattataacatcgat 179053
to top
>emb|AL714026.13| Mouse DNA sequence from clone RP23-322I11 on chromosome 2, complete
             sequence
          Length = 134955

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 66    tctcaaaggaagtaaatattaat 88
             |||||||| ||||||||||||||
Sbjct: 44832 tctcaaagaaagtaaatattaat 44810
to top
>dbj|AP001157.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-658F2, complete
            sequence
          Length = 200458

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 29   gtgcacatggtacaaagta 47
            |||||||||||||||||||
Sbjct: 9115 gtgcacatggtacaaagta 9097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,376,490
Number of Sequences: 3902068
Number of extensions: 1376490
Number of successful extensions: 119353
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118915
Number of HSP's gapped (non-prelim): 434
length of query: 128
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 107
effective length of database: 17,151,101,840
effective search space: 1835167896880
effective search space used: 1835167896880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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