ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 78 9e-12
2gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 1.9
3tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 1.9
4ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA 38 7.4
5gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 38 7.4
6gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 38 7.4
7gb|AC118021.13| Mus musculus chromosome 7, clone RP23-459P15, co... 38 7.4
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 7.4
9gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 38 7.4
10gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, comple... 38 7.4
11emb|AL607044.24| Human DNA sequence from clone RP13-392N17 on ch... 38 7.4
12gb|AC183607.3| Pan troglodytes BAC clone CH251-277D11 from chrom... 38 7.4
13gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell... 38 7.4
14gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell... 38 7.4
15gb|AC093872.3| Homo sapiens BAC clone RP11-610P19 from 4, comple... 38 7.4
16gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, comple... 38 7.4
17gb|AC073461.6| Homo sapiens BAC clone RP11-68G5 from 2, complete... 38 7.4
18dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
19gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 geno... 38 7.4
20dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 7.4
21gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 ... 38 7.4

>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 80/93 (86%), Gaps = 8/93 (8%)
 Strand = Plus / Minus

                                                                       
Query: 68  gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc-------tg 120
           ||||||||||||||||||||||| || ||||||||||||||||| ||||||       ||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873

                                            
Query: 121 accaccacgcacgcacttttttatgttgccgaa 153
            |||||||| |||||| ||||||||||||||||
Sbjct: 872 cccaccacgtacgcac-tttttatgttgccgaa 841



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>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete
              sequence
          Length = 222430

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     tctgaaccaaacaacatgac 94
              ||||||||||||||||||||
Sbjct: 111593 tctgaaccaaacaacatgac 111574



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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 75      tctgaaccaaacaacatgac 94
               ||||||||||||||||||||
Sbjct: 1893522 tctgaaccaaacaacatgac 1893503



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>ref|XM_469430.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   ttcgatctgaaccaaacaa 88
            |||||||||||||||||||
Sbjct: 1565 ttcgatctgaaccaaacaa 1547



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>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 46    ccaagtgctacaactttac 64
             |||||||||||||||||||
Sbjct: 83879 ccaagtgctacaactttac 83897



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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 70    ttcgatctgaaccaaacaa 88
             |||||||||||||||||||
Sbjct: 62069 ttcgatctgaaccaaacaa 62051



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>gb|AC118021.13| Mus musculus chromosome 7, clone RP23-459P15, complete sequence
          Length = 196441

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    agagaagcatgcatcatcc 47
             |||||||||||||||||||
Sbjct: 53194 agagaagcatgcatcatcc 53176



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 13       acattatattacagatagagaag 35
                ||||||||||| |||||||||||
Sbjct: 28656312 acattatattagagatagagaag 28656334



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 70       ttcgatctgaaccaaacaa 88
                |||||||||||||||||||
Sbjct: 27926341 ttcgatctgaaccaaacaa 27926323



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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 70    ttcgatctgaaccaaacaa 88
             |||||||||||||||||||
Sbjct: 98685 ttcgatctgaaccaaacaa 98703



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>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence
          Length = 200908

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 41   atcatccaagtgctacaac 59
            |||||||||||||||||||
Sbjct: 1809 atcatccaagtgctacaac 1791



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>emb|AL607044.24| Human DNA sequence from clone RP13-392N17 on chromosome 10, complete
             sequence
          Length = 125086

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ccaacatcacattatatta 23
             |||||||||||||||||||
Sbjct: 71210 ccaacatcacattatatta 71192



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>gb|AC183607.3| Pan troglodytes BAC clone CH251-277D11 from chromosome 7, complete
              sequence
          Length = 172027

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     aagtgctacaactttactg 66
              |||||||||||||||||||
Sbjct: 141737 aagtgctacaactttactg 141755



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>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 169124

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 127   acgcacgcacttttttatg 145
             |||||||||||||||||||
Sbjct: 63139 acgcacgcacttttttatg 63121



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>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 170301

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 127    acgcacgcacttttttatg 145
              |||||||||||||||||||
Sbjct: 105314 acgcacgcacttttttatg 105296



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>gb|AC093872.3| Homo sapiens BAC clone RP11-610P19 from 4, complete sequence
          Length = 59406

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 48    aagtgctacaactttactg 66
             |||||||||||||||||||
Sbjct: 55360 aagtgctacaactttactg 55342



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>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence
          Length = 144135

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 18    atattacagatagagaagc 36
             |||||||||||||||||||
Sbjct: 92855 atattacagatagagaagc 92837



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>gb|AC073461.6| Homo sapiens BAC clone RP11-68G5 from 2, complete sequence
          Length = 18744

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 41    atcatccaagtgctacaac 59
             |||||||||||||||||||
Sbjct: 18553 atcatccaagtgctacaac 18535



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 13       acattatattacagatagagaag 35
                ||||||||||| |||||||||||
Sbjct: 28747636 acattatattagagatagagaag 28747658



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 70       ttcgatctgaaccaaacaa 88
                |||||||||||||||||||
Sbjct: 28017665 ttcgatctgaaccaaacaa 28017647



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>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete
             sequence
          Length = 158839

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 13    acattatattacagatagagaag 35
             ||||||||||| |||||||||||
Sbjct: 42584 acattatattagagatagagaag 42562



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>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full
            insert sequence
          Length = 1586

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 70   ttcgatctgaaccaaacaa 88
            |||||||||||||||||||
Sbjct: 1567 ttcgatctgaaccaaacaa 1549



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>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete
              sequence
          Length = 307201

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 127    acgcacgcacttttttatg 145
              |||||||||||||||||||
Sbjct: 295141 acgcacgcacttttttatg 295123


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,370,453
Number of Sequences: 3902068
Number of extensions: 1370453
Number of successful extensions: 87768
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87671
Number of HSP's gapped (non-prelim): 96
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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