| Clone Name | rbaet78b09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA, complete cds Length = 1067 Score = 77.8 bits (39), Expect = 9e-12 Identities = 80/93 (86%), Gaps = 8/93 (8%) Strand = Plus / Minus Query: 68 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc-------tg 120 ||||||||||||||||||||||| || ||||||||||||||||| |||||| || Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873 Query: 121 accaccacgcacgcacttttttatgttgccgaa 153 |||||||| |||||| |||||||||||||||| Sbjct: 872 cccaccacgtacgcac-tttttatgttgccgaa 841
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tctgaaccaaacaacatgac 94 |||||||||||||||||||| Sbjct: 111593 tctgaaccaaacaacatgac 111574
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tctgaaccaaacaacatgac 94 |||||||||||||||||||| Sbjct: 1893522 tctgaaccaaacaacatgac 1893503
>ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1584 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 1565 ttcgatctgaaccaaacaa 1547
>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence Length = 168683 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 ccaagtgctacaactttac 64 ||||||||||||||||||| Sbjct: 83879 ccaagtgctacaactttac 83897
>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08 map R2847, complete sequence Length = 100918 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 62069 ttcgatctgaaccaaacaa 62051
>gb|AC118021.13| Mus musculus chromosome 7, clone RP23-459P15, complete sequence Length = 196441 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 agagaagcatgcatcatcc 47 ||||||||||||||||||| Sbjct: 53194 agagaagcatgcatcatcc 53176
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 acattatattacagatagagaag 35 ||||||||||| ||||||||||| Sbjct: 28656312 acattatattagagatagagaag 28656334 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 27926341 ttcgatctgaaccaaacaa 27926323
>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete sequence Length = 133889 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 98685 ttcgatctgaaccaaacaa 98703
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 atcatccaagtgctacaac 59 ||||||||||||||||||| Sbjct: 1809 atcatccaagtgctacaac 1791
>emb|AL607044.24| Human DNA sequence from clone RP13-392N17 on chromosome 10, complete sequence Length = 125086 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 5 ccaacatcacattatatta 23 ||||||||||||||||||| Sbjct: 71210 ccaacatcacattatatta 71192
>gb|AC183607.3| Pan troglodytes BAC clone CH251-277D11 from chromosome 7, complete sequence Length = 172027 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 aagtgctacaactttactg 66 ||||||||||||||||||| Sbjct: 141737 aagtgctacaactttactg 141755
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 acgcacgcacttttttatg 145 ||||||||||||||||||| Sbjct: 63139 acgcacgcacttttttatg 63121
>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170301 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 acgcacgcacttttttatg 145 ||||||||||||||||||| Sbjct: 105314 acgcacgcacttttttatg 105296
>gb|AC093872.3| Homo sapiens BAC clone RP11-610P19 from 4, complete sequence Length = 59406 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 aagtgctacaactttactg 66 ||||||||||||||||||| Sbjct: 55360 aagtgctacaactttactg 55342
>gb|AC097494.3| Homo sapiens BAC clone RP11-273B19 from 4, complete sequence Length = 144135 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 18 atattacagatagagaagc 36 ||||||||||||||||||| Sbjct: 92855 atattacagatagagaagc 92837
>gb|AC073461.6| Homo sapiens BAC clone RP11-68G5 from 2, complete sequence Length = 18744 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 41 atcatccaagtgctacaac 59 ||||||||||||||||||| Sbjct: 18553 atcatccaagtgctacaac 18535
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 acattatattacagatagagaag 35 ||||||||||| ||||||||||| Sbjct: 28747636 acattatattagagatagagaag 28747658 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 28017665 ttcgatctgaaccaaacaa 28017647
>gb|AC090882.10| Oryza sativa chromosome 3 BAC OSJNBa0014G15 genomic sequence, complete sequence Length = 158839 Score = 38.2 bits (19), Expect = 7.4 Identities = 22/23 (95%) Strand = Plus / Minus Query: 13 acattatattacagatagagaag 35 ||||||||||| ||||||||||| Sbjct: 42584 acattatattagagatagagaag 42562
>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full insert sequence Length = 1586 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 ttcgatctgaaccaaacaa 88 ||||||||||||||||||| Sbjct: 1567 ttcgatctgaaccaaacaa 1549
>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete sequence Length = 307201 Score = 38.2 bits (19), Expect = 7.4 Identities = 19/19 (100%) Strand = Plus / Minus Query: 127 acgcacgcacttttttatg 145 ||||||||||||||||||| Sbjct: 295141 acgcacgcacttttttatg 295123 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,370,453 Number of Sequences: 3902068 Number of extensions: 1370453 Number of successful extensions: 87768 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87671 Number of HSP's gapped (non-prelim): 96 length of query: 153 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 132 effective length of database: 17,151,101,840 effective search space: 2263945442880 effective search space used: 2263945442880 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)