ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X84308.1|HVLHCA2 H.vulgare mRNA for photosysteme I antenna p... 343 1e-91
2emb|X79277.1|LTLHAB L.temulentum lhaB mRNA 92 8e-16
3ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
4ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
5ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
6ref|XM_478841.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.16
7ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
8ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
9ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
10ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group... 44 0.16
11dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.16
12dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.16
13dbj|AK105002.2| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
14dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
15dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
16dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
17dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
18dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
19dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
20dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
21dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
22dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
23dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.16
24gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protei... 44 0.16
25gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosom... 40 2.5
26gb|AF441790.2| Synechococcus sp. PCC 7942 plasmid pANL, complete... 40 2.5
27gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, comp... 40 2.5
28emb|AL034374.2|HS483K16 Human DNA sequence from clone RP3-483K16... 40 2.5
29gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, comple... 40 2.5
30gb|U70379.1|SSU70379 Synechococcus PCC7942 NarL homolog, histidi... 40 2.5
31gb|CP000101.1| Synechococcus elongatus PCC 7942 plasmid 1, compl... 40 2.5 
>emb|X84308.1|HVLHCA2 H.vulgare mRNA for photosysteme I antenna protein
          Length = 1050

 Score =  343 bits (173), Expect = 1e-91
 Identities = 173/173 (100%)
 Strand = Plus / Minus

                                                                        
Query: 30   acatcggttacaccagagtacaagtacacatccaacaagcatgcattgctccacaattac 89
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 acatcggttacaccagagtacaagtacacatccaacaagcatgcattgctccacaattac 948

                                                                        
Query: 90   ataccatcatccacgggaaaaataatctaattccaccagcgatcttcttccccgtggtag 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947  ataccatcatccacgggaaaaataatctaattccaccagcgatcttcttccccgtggtag 888

                                                                 
Query: 150  cacactcctcggatttgttgctaactcccaacgtgttccttacttgggggcga 202
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887  cacactcctcggatttgttgctaactcccaacgtgttccttacttgggggcga 835
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>emb|X79277.1|LTLHAB L.temulentum lhaB mRNA
          Length = 1026

 Score = 91.7 bits (46), Expect = 8e-16
 Identities = 55/57 (96%), Gaps = 2/57 (3%)
 Strand = Plus / Minus

                                                                    
Query: 46  agtacaagtacacatccaacaagcat--gcattgctccacaattacataccatcatc 100
           ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 961 agtacaagtacacatccaacaagcatatgcattgctccacaattacataccatcatc 905



 Score = 75.8 bits (38), Expect = 5e-11
 Identities = 74/83 (89%), Gaps = 6/83 (7%)
 Strand = Plus / Minus

                                                                       
Query: 125 ccagcgatcttcttccccgtgg----tagcacactcctcggatttgttg-ctaactccca 179
           ||||||||||||||||||||||    |||||||||||||||||| |||| | |||| |||
Sbjct: 872 ccagcgatcttcttccccgtggcagctagcacactcctcggattagttgcccaact-cca 814

                                  
Query: 180 acgtgttccttacttgggggcga 202
           ||||| |||||||||||||||||
Sbjct: 813 acgtgctccttacttgggggcga 791
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>ref|XM_507384.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1062

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1014 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 961
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>ref|XM_507383.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1059

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1015 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 962
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>ref|XM_507382.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1058

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1017 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 964
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>ref|XM_478841.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1047

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1020 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 967
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>ref|XM_507381.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1061

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1020 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 967
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>ref|XM_507380.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1065

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1021 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 968
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>ref|XM_507379.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1069

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1021 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 968
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>ref|XM_506426.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1065_B06.19-1
            mRNA
          Length = 1068

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1024 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 971
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                      
Query: 30       acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
                |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 23305742 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 23305689
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>dbj|AP003804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1065_B06
          Length = 113170

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                   
Query: 30    acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
             |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 61000 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 60947
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>dbj|AK105002.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-E07, full
            insert sequence
          Length = 1568

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1543 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 1490
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>dbj|AK119176.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F08, full
            insert sequence
          Length = 1088

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1035 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 982
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>dbj|AK104651.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-B06, full
            insert sequence
          Length = 1069

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1021 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 968
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>dbj|AK104608.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C01, full
            insert sequence
          Length = 1065

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1021 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 968
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>dbj|AK104283.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-H09, full
            insert sequence
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1049 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 996
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>dbj|AK104177.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D02, full
            insert sequence
          Length = 1058

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1017 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 964
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>dbj|AK104127.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E10, full
            insert sequence
          Length = 1061

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1020 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 967
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>dbj|AK104016.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G05, full
            insert sequence
          Length = 1062

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1014 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 961
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>dbj|AK103966.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H03, full
            insert sequence
          Length = 1059

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1015 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 962
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>dbj|AK070051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023040A06, full
            insert sequence
          Length = 1646

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1525 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 1472
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>dbj|AK060987.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C01, full
            insert sequence
          Length = 1068

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                  
Query: 30   acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
            |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 1024 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 971
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>gb|AF010321.1|AF010321 Oryza sativa photosystem I antenna protein (Lhca) mRNA, complete
           cds
          Length = 1066

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 47/54 (87%), Gaps = 1/54 (1%)
 Strand = Plus / Minus

                                                                 
Query: 30  acatcggttacaccagagtacaagtacacatccaacaa-gcatgcattgctcca 82
           |||||||||||| || |||||| |||||||  |||||| ||||||| |||||||
Sbjct: 994 acatcggttacatcatagtacaggtacacaatcaacaaggcatgcagtgctcca 941
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>gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosome 1, complete sequence
          Length = 212447

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    gggaaaaataatctaattcc 123
              ||||||||||||||||||||
Sbjct: 194563 gggaaaaataatctaattcc 194582
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>gb|AF441790.2| Synechococcus sp. PCC 7942 plasmid pANL, complete sequence
          Length = 46366

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   atctaattccaccagcgatc 133
             ||||||||||||||||||||
Sbjct: 16590 atctaattccaccagcgatc 16609
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>gb|AC129567.8| Mus musculus chromosome 8, clone RP23-50L10, complete sequence
          Length = 228046

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 52    agtacacatccaacaagcatgcat 75
             ||||||||| ||||||||||||||
Sbjct: 91116 agtacacatacaacaagcatgcat 91093
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>emb|AL034374.2|HS483K16 Human DNA sequence from clone RP3-483K16 on chromosome 6p12.1-21.1
             Contains the gene for homolog of yeast long chain
             polyunsaturated fatty acid elongation enzyme 2 (HELO1), a
             40S Ribosomal protein (RPS16) pseudogene, a 60S Ribosomal
             protein (RPL31) pseudogene and CpG islands, complete
             sequence
          Length = 101270

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 161   gatttgttgctaactcccaa 180
             ||||||||||||||||||||
Sbjct: 96139 gatttgttgctaactcccaa 96158
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>gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, complete sequence
          Length = 174607

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   gggaaaaataatctaattcc 123
             ||||||||||||||||||||
Sbjct: 64988 gggaaaaataatctaattcc 65007
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>gb|U70379.1|SSU70379 Synechococcus PCC7942 NarL homolog, histidine protein kinase and
            response regulator genes complete cds
          Length = 5275

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  atctaattccaccagcgatc 133
            ||||||||||||||||||||
Sbjct: 2858 atctaattccaccagcgatc 2877
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>gb|CP000101.1| Synechococcus elongatus PCC 7942 plasmid 1, complete sequence
          Length = 46366

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 114   atctaattccaccagcgatc 133
             ||||||||||||||||||||
Sbjct: 41256 atctaattccaccagcgatc 41275


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,396,768
Number of Sequences: 3902068
Number of extensions: 1396768
Number of successful extensions: 83177
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 83119
Number of HSP's gapped (non-prelim): 77
length of query: 202
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 180
effective length of database: 17,147,199,772
effective search space: 3086495958960
effective search space used: 3086495958960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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