ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HUNB_DROTA (O46260) Protein hunchback (Fragments) 29 3.9
2HUNB_DRODA (O46262) Protein hunchback (Fragments) 29 3.9
3HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHR... 28 5.2
4HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHR... 28 8.8

>HUNB_DROTA (O46260) Protein hunchback (Fragments)|
          Length = 192

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 28  NLKNNQILHKHHLFSVHTPTHHLDSPSHAKS 120
           N+K   I H HH    H  +HH DS S+A S
Sbjct: 9   NIKQEPISHHHHHHHAH-HSHHADSNSNASS 38



to top

>HUNB_DRODA (O46262) Protein hunchback (Fragments)|
          Length = 195

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 28  NLKNNQILHKHHLFSVHTPTHHLDSPSHAKSISPER 135
           N+K   I H HH    H   H  DS S++ + SP +
Sbjct: 9   NIKQEPISHHHHHHHAHHSHHAHDSNSNSNASSPHQ 44



to top

>HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHRP-III)|
          Length = 241

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 52  HKHHLFSVHTPTHHLDSPSHAKSISPERHAAQQHPSA 162
           H HH+   H   HH+    HA   +   HAA  H +A
Sbjct: 59  HAHHVADAHH-AHHVADAHHAHHAANAHHAANAHHAA 94



to top

>HRP1_PLAFA (P05227) Histidine-rich protein precursor (Clone PFHRP-II)|
          Length = 332

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 14/37 (37%), Positives = 15/37 (40%)
 Frame = +1

Query: 52  HKHHLFSVHTPTHHLDSPSHAKSISPERHAAQQHPSA 162
           H HH    H   HH     HA   S   HAA  H +A
Sbjct: 143 HAHHAADAHH-AHHAAYAHHAHHASDAHHAADAHHAA 178


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.124    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,117,178
Number of Sequences: 219361
Number of extensions: 425019
Number of successful extensions: 1343
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 80,573,946
effective HSP length: 35
effective length of database: 72,896,311
effective search space used: 1749511464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
to top