ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet78a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_001032032.1| Drosophila melanogaster held out wings CG102... 42 0.56
2gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, co... 42 0.56
3gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, r... 42 0.56
4emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding... 42 0.56
5gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75... 42 0.56
6gb|AF005849.1|AF005849 Drosophila melanogaster anon1F4 pseudogen... 42 0.56
7gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, com... 40 2.2
8gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, co... 40 2.2
9emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in l... 40 2.2
10emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in... 40 2.2
11emb|BX324151.11| Zebrafish DNA sequence from clone CH211-62C19 i... 40 2.2
12dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 2.2
13ref|XM_686371.1| PREDICTED: Danio rerio similar to endothelial c... 40 2.2
14gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, com... 40 2.2
15dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
16gb|AC114311.3| Homo sapiens chromosome 5 clone RP11-2N5, complet... 40 2.2
17gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 40 2.2
18dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
19gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, co... 40 2.2
20emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 i... 40 2.2
21gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, co... 40 2.2
22emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in... 40 2.2
23gb|AF005850.1|AF005850 Drosophila yakuba anon1F4 pseudogene, par... 40 2.2
24dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 2.2
25emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chr... 40 2.2
26ref|XM_609360.2| PREDICTED: Bos taurus similar to chromodomain h... 38 8.8
27gb|AC148453.2| Xenopus tropicalis clone CH216-147I21, complete s... 38 8.8
28emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in... 38 8.8
29emb|CR376748.8| Zebrafish DNA sequence from clone DKEY-7I1 in li... 38 8.8
30gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosom... 38 8.8
31gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complet... 38 8.8
32emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chr... 38 8.8
33emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in ... 38 8.8
34gb|AC025039.7| Homo sapiens chromosome 10 clone RP11-457M15, com... 38 8.8
35gb|AC018508.9| Homo sapiens chromosome 10 clone RP11-123L21, com... 38 8.8
36gb|BC110235.1| Bos taurus cDNA clone MGC:133958 IMAGE:8064098, c... 38 8.8
37gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, comple... 38 8.8
38gb|AC092583.2| Homo sapiens BAC clone RP11-19B22 from 2, complet... 38 8.8
39gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence 38 8.8
40emb|AL928621.16| Mouse DNA sequence from clone RP23-401G6 on chr... 38 8.8 
>ref|NM_001032032.1| Drosophila melanogaster held out wings CG10293-RC, transcript variant
            C (how), mRNA
          Length = 4030

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 107  cacatgcaaaatctatcagtc 127
            |||||||||||||||||||||
Sbjct: 3603 cacatgcaaaatctatcagtc 3623
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>gb|AC007114.8| Homo sapiens chromosome 17, clone RP11-166P13, complete sequence
          Length = 148781

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 28     aatctgaaaaataaccagata 48
              |||||||||||||||||||||
Sbjct: 112377 aatctgaaaaataaccagata 112397
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>gb|AC008144.5|AC008144 Drosophila melanogaster, chromosome 3R, region 93F-93F, BAC clone
             BACR04F21, complete sequence
          Length = 171226

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 107   cacatgcaaaatctatcagtc 127
             |||||||||||||||||||||
Sbjct: 66845 cacatgcaaaatctatcagtc 66825
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>emb|X14794.1|ZMCAB1 Maize cab-1 gene for chlorophyll a/b-binding protein
          Length = 2100

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 31/33 (93%), Gaps = 1/33 (3%)
 Strand = Plus / Minus

                                             
Query: 68   ttagtgtacacacaccaactcatcatctcgact 100
            |||||||||| || |||||||||||||||||||
Sbjct: 1833 ttagtgtaca-acgccaactcatcatctcgact 1802
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>gb|AE003737.3| Drosophila melanogaster chromosome 3R, section 75 of 118 of the complete
              sequence
          Length = 178251

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 107    cacatgcaaaatctatcagtc 127
              |||||||||||||||||||||
Sbjct: 119539 cacatgcaaaatctatcagtc 119559
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>gb|AF005849.1|AF005849 Drosophila melanogaster anon1F4 pseudogene, partial sequence
          Length = 2329

 Score = 42.1 bits (21), Expect = 0.56
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 107  cacatgcaaaatctatcagtc 127
            |||||||||||||||||||||
Sbjct: 1902 cacatgcaaaatctatcagtc 1922
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>gb|AC093365.10| Mus musculus chromosome 3, clone RP23-60O16, complete sequence
          Length = 236143

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    agcatccatcagcaatgaag 168
              ||||||||||||||||||||
Sbjct: 112171 agcatccatcagcaatgaag 112152
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>gb|AC163991.3| Mus musculus chromosome 15, clone RP24-119L11, complete sequence
          Length = 152173

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 136   catgcagcacagcagcatcc 155
             ||||||||||||||||||||
Sbjct: 34686 catgcagcacagcagcatcc 34667
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>emb|CR626890.8| Zebrafish DNA sequence from clone DKEY-83J7 in linkage group 15,
             complete sequence
          Length = 211127

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cagcacagcagcatccatca 159
             ||||||||||||||||||||
Sbjct: 84374 cagcacagcagcatccatca 84393
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>emb|BX324206.6| Zebrafish DNA sequence from clone CH211-66O10 in linkage group 15,
              complete sequence
          Length = 164638

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    cagcacagcagcatccatca 159
              ||||||||||||||||||||
Sbjct: 139671 cagcacagcagcatccatca 139690
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>emb|BX324151.11| Zebrafish DNA sequence from clone CH211-62C19 in linkage group 15,
             complete sequence
          Length = 182149

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cagcacagcagcatccatca 159
             ||||||||||||||||||||
Sbjct: 30941 cagcacagcagcatccatca 30960
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     tgtacacacaccaactcatc 91
              ||||||||||||||||||||
Sbjct: 133595 tgtacacacaccaactcatc 133576
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>ref|XM_686371.1| PREDICTED: Danio rerio similar to endothelial cell adhesion
           molecule (LOC563007), mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 cagcacagcagcatccatca 159
           ||||||||||||||||||||
Sbjct: 223 cagcacagcagcatccatca 204
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>gb|AC156618.5| Mus musculus chromosome 3, clone RP24-372J15, complete sequence
          Length = 171545

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   agacatgcagcacagcagca 152
             ||||||||||||||||||||
Sbjct: 23011 agacatgcagcacagcagca 22992
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 138      tgcagcacagcagcatccat 157
                ||||||||||||||||||||
Sbjct: 18990787 tgcagcacagcagcatccat 18990768
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>gb|AC114311.3| Homo sapiens chromosome 5 clone RP11-2N5, complete sequence
          Length = 96123

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    ttgattaatctgaaaaataa 41
             ||||||||||||||||||||
Sbjct: 50377 ttgattaatctgaaaaataa 50396
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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 187215

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    tctttttagtgtacacacac 82
             ||||||||||||||||||||
Sbjct: 75284 tctttttagtgtacacacac 75303
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>dbj|AP004730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0009J19
          Length = 156988

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   tgcagcacagcagcatccat 157
             ||||||||||||||||||||
Sbjct: 83457 tgcagcacagcagcatccat 83438
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>gb|AC102905.9| Mus musculus chromosome 15, clone RP24-303N12, complete sequence
          Length = 153799

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    catgcagcacagcagcatcc 155
              ||||||||||||||||||||
Sbjct: 130651 catgcagcacagcagcatcc 130632
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>emb|AL772198.14| Zebrafish DNA sequence from clone CH211-194D6 in linkage group 9,
             complete sequence
          Length = 211682

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   atgcagcacagcagcatccatcag 160
             |||||||||| |||||||||||||
Sbjct: 25016 atgcagcacatcagcatccatcag 25039
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>gb|AC104874.11| Mus musculus chromosome 3, clone RP23-453I14, complete sequence
          Length = 182940

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    agacatgcagcacagcagca 152
              ||||||||||||||||||||
Sbjct: 165644 agacatgcagcacagcagca 165625
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>emb|AL935316.7| Zebrafish DNA sequence from clone CH211-239C9 in linkage group 3,
             complete sequence
          Length = 174887

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cagcacagcagcatccatca 159
             ||||||||||||||||||||
Sbjct: 83612 cagcacagcagcatccatca 83631
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>gb|AF005850.1|AF005850 Drosophila yakuba anon1F4 pseudogene, partial sequence
          Length = 1611

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 107  cacatgcaaaatctatcagt 126
            ||||||||||||||||||||
Sbjct: 1118 cacatgcaaaatctatcagt 1137
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>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020,
             complete sequence
          Length = 80920

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    atctgaaaaataaccagata 48
             ||||||||||||||||||||
Sbjct: 66789 atctgaaaaataaccagata 66808
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>emb|AL671899.11| Mouse DNA sequence from clone RP23-27B23 on chromosome 3, complete
             sequence
          Length = 132775

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   agcatccatcagcaatgaag 168
             ||||||||||||||||||||
Sbjct: 83804 agcatccatcagcaatgaag 83785
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>ref|XM_609360.2| PREDICTED: Bos taurus similar to chromodomain helicase DNA binding
           protein 5 (LOC530880), mRNA
          Length = 6341

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   aagcggaaaaagaaagatg 19
           |||||||||||||||||||
Sbjct: 484 aagcggaaaaagaaagatg 502
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>gb|AC148453.2| Xenopus tropicalis clone CH216-147I21, complete sequence
          Length = 158285

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 131    aaagacatgcagcacagca 149
              |||||||||||||||||||
Sbjct: 157561 aaagacatgcagcacagca 157579
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>emb|CR788228.11| Zebrafish DNA sequence from clone CH211-15N4 in linkage group 3, complete
              sequence
          Length = 156998

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 23     tgattaatctgaaaaataa 41
              |||||||||||||||||||
Sbjct: 122111 tgattaatctgaaaaataa 122129
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>emb|CR376748.8| Zebrafish DNA sequence from clone DKEY-7I1 in linkage group 23, complete
              sequence
          Length = 233351

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 32     tgaaaaataaccagatatt 50
              |||||||||||||||||||
Sbjct: 194487 tgaaaaataaccagatatt 194505
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>gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosome 8, complete sequence
          Length = 193352

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    cttgattaatctgaaaaat 39
             |||||||||||||||||||
Sbjct: 62005 cttgattaatctgaaaaat 62023
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>gb|AC005017.1| Homo sapiens BAC clone GS1-214N13 from 7, complete sequence
          Length = 137176

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 59     accatctttttagtgtaca 77
              |||||||||||||||||||
Sbjct: 110818 accatctttttagtgtaca 110800
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>emb|AL845333.3| Mouse DNA sequence from clone RP23-245E19 on chromosome 4 Contains part
              of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 186256

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 22     ttgattaatctgaaaaata 40
              |||||||||||||||||||
Sbjct: 160038 ttgattaatctgaaaaata 160056
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>emb|BX322661.17| Zebrafish DNA sequence from clone RP71-78H1 in linkage group 9,
             complete sequence
          Length = 146527

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 141   agcacagcagcatccatca 159
             |||||||||||||||||||
Sbjct: 63923 agcacagcagcatccatca 63941
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>gb|AC025039.7| Homo sapiens chromosome 10 clone RP11-457M15, complete sequence
          Length = 172790

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 55    aaacaccatctttttagtg 73
             |||||||||||||||||||
Sbjct: 56362 aaacaccatctttttagtg 56344
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>gb|AC018508.9| Homo sapiens chromosome 10 clone RP11-123L21, complete sequence
          Length = 149901

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    aaacaccatctttttagtg 73
             |||||||||||||||||||
Sbjct: 19668 aaacaccatctttttagtg 19686
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>gb|BC110235.1| Bos taurus cDNA clone MGC:133958 IMAGE:8064098, complete cds
          Length = 1521

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 66 ttttagtgtacacacacca 84
          |||||||||||||||||||
Sbjct: 29 ttttagtgtacacacacca 11
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>gb|AC139718.1| Homo sapiens BAC clone RP11-269F21 from 4, complete sequence
          Length = 127342

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     aaagaaagatgccttgatt 27
             |||||||||||||||||||
Sbjct: 31882 aaagaaagatgccttgatt 31864
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>gb|AC092583.2| Homo sapiens BAC clone RP11-19B22 from 2, complete sequence
          Length = 155359

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    gaaaaataaccagatatta 51
             |||||||||||||||||||
Sbjct: 27360 gaaaaataaccagatatta 27378
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>gb|AC098698.3| Papio anubis clone RP41-177A23, complete sequence
          Length = 165334

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 59    accatctttttagtgtaca 77
             |||||||||||||||||||
Sbjct: 89266 accatctttttagtgtaca 89248
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>emb|AL928621.16| Mouse DNA sequence from clone RP23-401G6 on chromosome 2, complete
              sequence
          Length = 174248

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 141    agcacagcagcatccatcagcaa 163
              ||||||||| |||||||||||||
Sbjct: 120645 agcacagcaccatccatcagcaa 120623


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,396,558
Number of Sequences: 3902068
Number of extensions: 2396558
Number of successful extensions: 160732
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160566
Number of HSP's gapped (non-prelim): 166
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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