ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ST1B1_CANFA (Q95JD5) Sulfotransferase family cytosolic 1B member... 28 4.6
2ST1C1_HUMAN (O00338) Sulfotransferase 1C1 (EC 2.8.2.-) (SULT1C#1... 28 6.0
3BLAR_BACLI (P12287) Regulatory protein blaR1 28 7.9
4CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator ... 28 7.9
5MIME_BOVIN (P19879) Mimecan precursor (Osteoglycin) [Contains: C... 28 7.9
6ST1C2_RAT (Q9WUW8) Sulfotransferase 1C2 (EC 2.8.2.-) (Sulfotrans... 28 7.9
7ST1C2_MOUSE (Q9D939) Sulfotransferase 1C2 (EC 2.8.2.-) 28 7.9

>ST1B1_CANFA (Q95JD5) Sulfotransferase family cytosolic 1B member 1 (EC 2.8.2.-)|
           (Sulfotransferase 1B1) (cSULT1B1)
          Length = 296

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 97  PVLLQSHTAVAVI--EFWSTNCKFIY 26
           P L+++H  +A++   FW  NCK IY
Sbjct: 103 PRLVKTHLPIALLPKSFWENNCKMIY 128



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>ST1C1_HUMAN (O00338) Sulfotransferase 1C1 (EC 2.8.2.-) (SULT1C#1) (ST1C2)|
           (humSULTC2)
          Length = 296

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 97  PVLLQSHTAVAVI--EFWSTNCKFIY 26
           P +L++H +  ++   FW  NCKF+Y
Sbjct: 103 PRILKTHLSTQLLPPSFWENNCKFLY 128



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>BLAR_BACLI (P12287) Regulatory protein blaR1|
          Length = 601

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 244 HTCRRST*NYSLVNLAKSKGVRAPVTGGINRCYI 143
           HTC+     +  V L++S  +++P+T G+ R YI
Sbjct: 159 HTCKEEIRFHQKVILSRSPLIKSPITFGVIRPYI 192



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>CMTA4_ARATH (Q9FYG2) Calmodulin-binding transcription activator 4|
           (Signal-responsive protein 5) (Ethylene-induced
           calmodulin-binding protein d) (EICBP.d)
           (Ethylene-induced calmodulin-binding protein 4) (EICBP4)
           (AtFIN21)
          Length = 1016

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 7/52 (13%)
 Frame = +2

Query: 146 IASIDAASNRSAYSFTFGQ-------IHKGVILCAAPACVG*KSNLIIPAGE 280
           I S       S +S  FG        I +GVI C AP C   K NL I +G+
Sbjct: 467 IGSFLCDPTESTWSCMFGNAQVPFEIIKEGVIRCEAPQCGPGKVNLCITSGD 518



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>MIME_BOVIN (P19879) Mimecan precursor (Osteoglycin) [Contains: Corneal keratan|
           sulfate proteoglycan 25 core protein (KSPG25 protein);
           Osteoinductive factor (OIF)]
          Length = 299

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 3   LNITVNILYINLQFVLQNSITATAVCDCNNTGYI 104
           LN+  ++  I+LQF    SIT    C  N+T YI
Sbjct: 231 LNLPESLRVIHLQFNNITSITDDTFCKANDTSYI 264



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>ST1C2_RAT (Q9WUW8) Sulfotransferase 1C2 (EC 2.8.2.-) (Sulfotransferase K1)|
           (rSULT1C2)
          Length = 296

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 97  PVLLQSHTAVAVI--EFWSTNCKFIY 26
           P +L++H    ++   FW+ NCKF+Y
Sbjct: 103 PRILRTHLPTQLLPPSFWTNNCKFLY 128



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>ST1C2_MOUSE (Q9D939) Sulfotransferase 1C2 (EC 2.8.2.-)|
          Length = 296

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -1

Query: 97  PVLLQSHTAVAVI--EFWSTNCKFIY 26
           P +L++H    ++   FW+ NCKF+Y
Sbjct: 103 PRILRTHLPTQLLPPSFWTNNCKFLY 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,681,388
Number of Sequences: 219361
Number of extensions: 633010
Number of successful extensions: 1163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 80,573,946
effective HSP length: 69
effective length of database: 65,438,037
effective search space used: 1570512888
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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