ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77h04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SLAP2_CAEEL (Q02328) Protein SLA2 homolog 29 2.8
2CPEY_SYNPY (Q02174) Bilin biosynthesis protein cpeY 28 8.1

>SLAP2_CAEEL (Q02328) Protein SLA2 homolog|
          Length = 927

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +2

Query: 131 IVSFQFCHCMHIIQAERADAHLKHP*QTLHQVHRFTR 241
           +++++FCH +H +     D H K P +T   V+RFT+
Sbjct: 65  VLTWKFCHLVHKLLR---DGHRKVPEETYRYVNRFTQ 98



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>CPEY_SYNPY (Q02174) Bilin biosynthesis protein cpeY|
          Length = 419

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -1

Query: 255 ITYAPRVNRCTWCSVCHGCLRCASALSA*IMCIQWQNWNDTMLDCLEISVTLRASRVMCL 76
           I   P + +C W    +       AL   I+  Q Q + D M+D L +  T +   + CL
Sbjct: 63  IDAVPAIGKCLWSDDVYLVENSVWALQ--ILQCQDQIFIDQMIDILRVDTTNQRISIQCL 120

Query: 75  AVDPISQ 55
           A   IS+
Sbjct: 121 ATLNISR 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,560,918
Number of Sequences: 219361
Number of extensions: 578723
Number of successful extensions: 1226
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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