ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 505 e-140
2dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic D... 505 e-140
3dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 46 0.053
4gb|AC098678.2| Homo sapiens BAC clone RP11-681P18 from 4, comple... 42 0.83
5gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, r... 42 0.83
6gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65... 42 0.83
7ref|XM_323757.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.3
8ref|XM_952389.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.3
9gb|AY552548.1| Fremyella diplosiphon TspO-like protein, hypothet... 40 3.3
10emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in... 40 3.3
11ref|XM_765725.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 3.3
12gb|AC133537.2| Homo sapiens chromosome 5 clone CTD-2310L4, compl... 40 3.3
13emb|X04592.2|FDCPEAB Fremyella diplosiphon gene for tspO-like pr... 40 3.3
14gb|AC113424.2| Homo sapiens chromosome 5 clone RP11-624C4, compl... 40 3.3 
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  505 bits (255), Expect = e-140
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                            
Query: 1        atcggcaaagttgcgaaataggatcattatctagacggcaatttattggcaaaattgtga 60
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37519105 atcggcaaagttgcgaaataggatcattatctagacggcaatttattggcaaaattgtga 37519164

                                                                            
Query: 61       aataggatcaactgccaagcacatgacgcgggaagcacgcaaagttactgaaatttctaa 120
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37519165 aataggatcaactgccaagcacatgacgcgggaagcacgcaaagttactgaaatttctaa 37519224

                                                                            
Query: 121      gcagtcaagcatagtatcattccaattctgccattgtatgcacattattcaagcagagag 180
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37519225 gcagtcaagcatagtatcattccaattctgccattgtatgcacattattcaagcagagag 37519284

                                                                            
Query: 181      agctgacgcacatctcaaacacccatgacaaacgctacaccaagtgcatcggttcactcg 240
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 37519285 agctgacgcacatctcaaacacccatgacaaacgctacaccaagtgcatcggttcactcg 37519344

                               
Query: 241      tggtgcatatgtgat 255
                |||||||||||||||
Sbjct: 37519345 tggtgcatatgtgat 37519359



 Score = 42.1 bits (21), Expect = 0.83
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 26       attatctagacggcaatttattggcaaaattgtgaaataggatca 70
                |||| ||||| | |||||||| |||||| ||| ||||||||||||
Sbjct: 37519086 attaactagatgacaatttatcggcaaagttgcgaaataggatca 37519130
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>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0505D12
          Length = 146951

 Score =  505 bits (255), Expect = e-140
 Identities = 255/255 (100%)
 Strand = Plus / Plus

                                                                          
Query: 1      atcggcaaagttgcgaaataggatcattatctagacggcaatttattggcaaaattgtga 60
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113642 atcggcaaagttgcgaaataggatcattatctagacggcaatttattggcaaaattgtga 113701

                                                                          
Query: 61     aataggatcaactgccaagcacatgacgcgggaagcacgcaaagttactgaaatttctaa 120
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113702 aataggatcaactgccaagcacatgacgcgggaagcacgcaaagttactgaaatttctaa 113761

                                                                          
Query: 121    gcagtcaagcatagtatcattccaattctgccattgtatgcacattattcaagcagagag 180
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113762 gcagtcaagcatagtatcattccaattctgccattgtatgcacattattcaagcagagag 113821

                                                                          
Query: 181    agctgacgcacatctcaaacacccatgacaaacgctacaccaagtgcatcggttcactcg 240
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113822 agctgacgcacatctcaaacacccatgacaaacgctacaccaagtgcatcggttcactcg 113881

                             
Query: 241    tggtgcatatgtgat 255
              |||||||||||||||
Sbjct: 113882 tggtgcatatgtgat 113896



 Score = 42.1 bits (21), Expect = 0.83
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                           
Query: 26     attatctagacggcaatttattggcaaaattgtgaaataggatca 70
              |||| ||||| | |||||||| |||||| ||| ||||||||||||
Sbjct: 113623 attaactagatgacaatttatcggcaaagttgcgaaataggatca 113667
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 193    tctcaaacacccatgacaaacgc 215
              |||||||||||||||||||||||
Sbjct: 582907 tctcaaacacccatgacaaacgc 582885
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>gb|AC098678.2| Homo sapiens BAC clone RP11-681P18 from 4, complete sequence
          Length = 93177

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    gcaatttattggcaaaattgt 58
             |||||||||||||||||||||
Sbjct: 26116 gcaatttattggcaaaattgt 26136
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>gb|AC008142.2|AC008142 Drosophila melanogaster, chromosome 3R, region 92B-92B, BAC clone
             BACR48D03, complete sequence
          Length = 175917

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 152   cattgtatgcacattattcaagcag 176
             ||||||||||||||||| |||||||
Sbjct: 89937 cattgtatgcacattatacaagcag 89961
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>gb|AE003727.3| Drosophila melanogaster chromosome 3R, section 65 of 118 of the complete
              sequence
          Length = 242618

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 152    cattgtatgcacattattcaagcag 176
              ||||||||||||||||| |||||||
Sbjct: 185551 cattgtatgcacattatacaagcag 185575
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>ref|XM_323757.1| Neurospora crassa OR74A hypothetical protein (NCU04405.1) partial
           mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 agagagctgacgcacatctc 196
           ||||||||||||||||||||
Sbjct: 197 agagagctgacgcacatctc 178
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>ref|XM_952389.1| Neurospora crassa OR74A hypothetical protein (NCU04405.1) partial
           mRNA
          Length = 474

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 177 agagagctgacgcacatctc 196
           ||||||||||||||||||||
Sbjct: 197 agagagctgacgcacatctc 178
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>gb|AY552548.1| Fremyella diplosiphon TspO-like protein, hypothetical protein, NblA-1
            (nblA), CpeB (cpeB), CpeA (cpeA), CpeY (cpeY), and CpeZ
            (cpeZ) genes, complete cds
          Length = 6453

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 34   gacggcaatttattggcaaa 53
            ||||||||||||||||||||
Sbjct: 1215 gacggcaatttattggcaaa 1234
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>emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in linkage group 17,
             complete sequence
          Length = 155951

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    atttattggcaaaattgtgaaata 64
             |||| |||||||||||||||||||
Sbjct: 10457 atttgttggcaaaattgtgaaata 10434
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>ref|XM_765725.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_456_254_8683)
            partial mRNA
          Length = 8430

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 172  agcagagagagctgacgcacatct 195
            |||||||||||| |||||||||||
Sbjct: 1931 agcagagagagcagacgcacatct 1908
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>gb|AC133537.2| Homo sapiens chromosome 5 clone CTD-2310L4, complete sequence
          Length = 102029

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 101   aaagttactgaaatttctaa 120
             ||||||||||||||||||||
Sbjct: 60540 aaagttactgaaatttctaa 60521
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>emb|X04592.2|FDCPEAB Fremyella diplosiphon gene for tspO-like protein, nblA, cpeB, cpeA,
           cpeY & cpeZ genes
          Length = 6867

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 34  gacggcaatttattggcaaa 53
           ||||||||||||||||||||
Sbjct: 788 gacggcaatttattggcaaa 807
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>gb|AC113424.2| Homo sapiens chromosome 5 clone RP11-624C4, complete sequence
          Length = 194717

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    aaagttactgaaatttctaa 120
              ||||||||||||||||||||
Sbjct: 185668 aaagttactgaaatttctaa 185687


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,976,573
Number of Sequences: 3902068
Number of extensions: 1976573
Number of successful extensions: 43236
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43199
Number of HSP's gapped (non-prelim): 35
length of query: 255
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 233
effective length of database: 17,147,199,772
effective search space: 3995297546876
effective search space used: 3995297546876
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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