ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77g04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSCR2_DROME (Q9W3C2) Hypothetical protein CG1785 32 0.54
2CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2 29 3.5
3DISC1_HUMAN (Q9NRI5) Disrupted in schizophrenia 1 protein 29 3.5
4PMPF_CHLMU (Q9PL46) Probable outer membrane protein pmpF precurs... 28 4.6
5STE2_SACKL (P12384) Pheromone alpha factor receptor 28 6.0
6FIBA_PARPA (P19477) Fibrinogen-like protein A precursor (FREP-A) 28 7.8
7DLK_HUMAN (P80370) Delta-like protein precursor (DLK) (pG2) [Con... 28 7.8

>GSCR2_DROME (Q9W3C2) Hypothetical protein CG1785|
          Length = 478

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 183 KFAEDRRNMRNVGSFQPDQSRSLFIIDSS 269
           +F ED+R    VG+F   Q   LF++DSS
Sbjct: 31  QFLEDQRQEERVGTFADKQDEDLFVVDSS 59



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>CWC2_CANGA (Q6FNR8) Pre-mRNA-splicing factor CWC2|
          Length = 306

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +3

Query: 162 LDCNWT*KFAEDRRNMRNVGSFQPDQSRSLFI 257
           LDC    K AE+R +M  VGSF   Q+R+L++
Sbjct: 107 LDCFGREKHAENREDMAGVGSFN-QQNRTLYV 137



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>DISC1_HUMAN (Q9NRI5) Disrupted in schizophrenia 1 protein|
          Length = 854

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 249 ATCSDPAGRIRHSSCSSCPQ-QISKSSCNPNFKSRVAHPKKGSH 121
           A CSD A R+R  +  S P  ++S +SC+P     V     GSH
Sbjct: 162 AACSDGARRVR--AAGSLPSAELSSNSCSPGCGPEVPPTPPGSH 203



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>PMPF_CHLMU (Q9PL46) Probable outer membrane protein pmpF precursor|
           (Polymorphic membrane protein F)
          Length = 1025

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 79  AVITQLISYYNTINMRSFFRMSNTTFEVWIATGLRNLLRTG 201
           ++  Q I+Y N  N R  F +S+ T + W + GL     +G
Sbjct: 47  SIAAQYITYANVSNYRGNFTISSCTQDQWFSRGLSTTNSSG 87



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>STE2_SACKL (P12384) Pheromone alpha factor receptor|
          Length = 426

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
 Frame = -3

Query: 234 PAGRIRHSSCSSCPQQISKSSCNPNF-----KSRVAHPKKGSHVDCV 109
           P  R  +S C+  P   SK + NPN       +   + K G+H  CV
Sbjct: 351 PVSRTSNSRCNGYPNDGSKLAPNPNCVGHNGSTMSVNDKNGAHATCV 397



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>FIBA_PARPA (P19477) Fibrinogen-like protein A precursor (FREP-A)|
          Length = 282

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 240 SDPAGRIRHSSCSSCPQQISKS 175
           +DPAGR +  S  SCP++IS S
Sbjct: 42  ADPAGRQKRQSGLSCPKRISHS 63



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>DLK_HUMAN (P80370) Delta-like protein precursor (DLK) (pG2) [Contains: Fetal|
           antigen 1 (FA1)]
          Length = 383

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 7/36 (19%)
 Frame = -3

Query: 246 TCSDPAGRIRHSSCSSCPQ-------QISKSSCNPN 160
           TC D  GR  H+SC  CP        +I  +SC PN
Sbjct: 143 TCVDDEGRASHASC-LCPPGFSGNFCEIVANSCTPN 177


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,808,625
Number of Sequences: 219361
Number of extensions: 589823
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 80,573,946
effective HSP length: 71
effective length of database: 64,999,315
effective search space used: 1559983560
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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