ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1JTB_HUMAN (O76095) Protein JTB precursor (Jumping translocation ... 31 0.95
2JTB_MOUSE (O88824) Protein JTB precursor 29 2.8
3SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote... 28 4.7
4SAHH_STRAW (Q82DC9) Adenosylhomocysteinase (EC 3.3.1.1) (S-adeno... 28 6.1
5JTB_RAT (O88823) Protein JTB precursor 28 8.0

>JTB_HUMAN (O76095) Protein JTB precursor (Jumping translocation breakpoint|
           protein) (Prostate androgen-regulated protein) (PAR
           protein)
          Length = 146

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
 Frame = +2

Query: 23  IPCSSTKRNKILGCRS-------LSHMEGVI*CVLYI*SCFLI 130
           I CSS+KRN+   CRS           EG + CV  I +C +I
Sbjct: 83  ITCSSSKRNEFKSCRSALMEQRLFWKFEGAVVCVALIFACLVI 125



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>JTB_MOUSE (O88824) Protein JTB precursor|
          Length = 146

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = +2

Query: 23  IPCSSTKRNKILGCRSL---SHM----EGVI*CVLYI*SCFLI 130
           I CSS+KRN+   CRS     H+    EGV+  V  + +C +I
Sbjct: 83  ITCSSSKRNEFKSCRSALLEQHLFWKFEGVVVAVALVFACLVI 125



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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
 Frame = -1

Query: 264  GTMTKEKMSAEEQQKGSGGSS------YTPIR*SPSPVPHCASP 151
            G+ T+ +   +    G GGSS       +P+  SPSPVP  ASP
Sbjct: 1181 GSSTEAEPPTQPDGAGGGGSSPSPAPATSPVPPSPSPVPTPASP 1224



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>SAHH_STRAW (Q82DC9) Adenosylhomocysteinase (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase)
          Length = 485

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = -3

Query: 244 DVGRGAAEGLRGQFVHAHPLIAIPCSSLCVAMLYYLLVDQKTTLD 110
           DVG+G AE LRGQ          P  +L  AM  Y    Q TTLD
Sbjct: 275 DVGKGCAESLRGQGARVIVTEIDPICALQAAMDGY----QVTTLD 315



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>JTB_RAT (O88823) Protein JTB precursor|
          Length = 146

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
 Frame = +2

Query: 23  IPCSSTKRNKILGCRSL---SHM----EGVI*CVLYI*SCFLI 130
           I CSS+KRN+   CRS     H+    EG++  V  + +C +I
Sbjct: 83  ITCSSSKRNEFKSCRSALLEQHLFWKFEGIVVGVALVFACLVI 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,788,170
Number of Sequences: 219361
Number of extensions: 679889
Number of successful extensions: 1650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1650
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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