ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77e08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX323820.4| Zebrafish DNA sequence from clone CH211-251K4 in... 40 2.7
2emb|AL974308.13| Zebrafish DNA sequence from clone DKEY-29P20, c... 40 2.7
3emb|CR548630.7| Zebrafish DNA sequence from clone CH211-232B12 i... 40 2.7

>emb|BX323820.4| Zebrafish DNA sequence from clone CH211-251K4 in linkage group 4
             Contains the gene for a novel protein similar to
             vertebrate calcium channel voltage-dependent alpha 2/delta
             subunit 1 (CACNA2D1) and a CpG island, complete sequence
          Length = 172228

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   acatttgtaatatgtctttt 192
             ||||||||||||||||||||
Sbjct: 34374 acatttgtaatatgtctttt 34393



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>emb|AL974308.13| Zebrafish DNA sequence from clone DKEY-29P20, complete sequence
          Length = 180511

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aacagatacatttgtaatat 185
              ||||||||||||||||||||
Sbjct: 130837 aacagatacatttgtaatat 130818



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>emb|CR548630.7| Zebrafish DNA sequence from clone CH211-232B12 in linkage group 11,
              complete sequence
          Length = 117408

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    aacagatacatttgtaatat 185
              ||||||||||||||||||||
Sbjct: 111045 aacagatacatttgtaatat 111026


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,179,103
Number of Sequences: 3902068
Number of extensions: 2179103
Number of successful extensions: 140315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 140306
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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