>RGA7_SCHPO (O94466) Probable Rho-GTPase-activating protein 7|
          Length = 695

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 71  HKNTKEKRQKVKERARNKKNAY 136
           HKN + KR+ +KE A+ ++NAY
Sbjct: 137 HKNAERKRKSIKEYAKKQENAY 158

>UVH1_ARATH (Q9LKI5) DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet|
           hypersensitive 1) (AtRAD1) (DNA excision repair protein
           XP-F homolog)
          Length = 956

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 43  KLHLSTLHTPQKHQRKTPKG 102
           K+ L ++ TPQK ++KTPKG
Sbjct: 455 KIELRSMQTPQKKKQKTPKG 474

>PDIA5_RAT (Q5I0H9) Protein disulfide-isomerase A5 precursor (EC 5.3.4.1)|
          Length = 517

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 KREHVIKKTLTPHLPHLAKLILHFTVTA 188
           K++H +     P  PH  K+I HFT TA
Sbjct: 411 KKKHTLVMFYAPWCPHCKKVIPHFTATA 438

>PDIA5_MOUSE (Q921X9) Protein disulfide-isomerase A5 precursor (EC 5.3.4.1)|
           (Protein disulfide isomerase-related protein)
          Length = 517

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 KREHVIKKTLTPHLPHLAKLILHFTVTA 188
           K++H +     P  PH  K+I HFT TA
Sbjct: 411 KKKHTLVMFYAPWCPHCKKVIPHFTATA 438

>POLS_CHIKN (Q5WQY5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68  PHKNTKEKRQKVKERA-RNKKNAYSTPPPSR 157
           P KN K K+QK K++A RN  N    PP  +
Sbjct: 61  PRKNRKNKKQKQKQQAPRNNMNQKKQPPKKK 91

>PDIA5_HUMAN (Q14554) Protein disulfide-isomerase A5 precursor (EC 5.3.4.1)|
           (Protein disulfide isomerase-related protein)
          Length = 519

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 105 KREHVIKKTLTPHLPHLAKLILHFTVTA 188
           K++H +     P  PH  K+I HFT TA
Sbjct: 413 KKKHTLVMFYAPWCPHCKKVIPHFTATA 440

>YNJ1_YEAST (P53935) Hypothetical 141.5 kDa protein in YPT53-RHO2 intergenic|
           region
          Length = 1240

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 77  NTKEKRQKVKERARNKKNAYSTPPPS 154
           N+K KR+K K +  NKKN  S P  S
Sbjct: 4   NSKSKRRKNKSKQHNKKNGNSDPEQS 29

>SYTL4_MOUSE (Q9R0Q1) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 673

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
 Frame = +3

Query: 81  PKKNAKRLKREHVIKKTLTPHLPH-----------LAKLILHFTVTARDPIGA 206
           P +N    ++  V+KKTL+PH  H           L  + L  TV  R+P+ +
Sbjct: 559 PMRNKASKRKTPVMKKTLSPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLAS 611

>SYTL4_RAT (Q8VHQ7) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 672

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
 Frame = +3

Query: 81  PKKNAKRLKREHVIKKTLTPHLPH-----------LAKLILHFTVTARDPIGA 206
           P +N    ++  V+KKTL PH  H           L  + L  TV  R+P+ +
Sbjct: 558 PMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLAS 610

>SYTL4_HUMAN (Q96C24) Synaptotagmin-like protein 4 (Exophilin-2) (Granuphilin)|
          Length = 671

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 11/53 (20%)
 Frame = +3

Query: 81  PKKNAKRLKREHVIKKTLTPHLPH-----------LAKLILHFTVTARDPIGA 206
           P +N    ++  V+KKTL PH  H           L  + L  TV  R+P+ +
Sbjct: 557 PMRNKASKRKTPVMKKTLNPHYNHTFVYNGVRLEDLQHMCLELTVWDREPLAS 609

>POLS_CHIKS (Q8JUX5) Structural polyprotein (p130) [Contains: Capsid protein|
           (EC 3.4.21.-) (Coat protein) (C); p62 (E3/E2); E3
           protein (Spike glycoprotein E3); E2 envelope
           glycoprotein (Spike glycoprotein E2); 6K protein; E1
           envelope glycoprotein (Spike g
          Length = 1248

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +2

Query: 68  PHKNTKEKRQKVKERA-RNKKNAYSTPPPSR 157
           P KN K K+QK K++A +N  N    PP  +
Sbjct: 61  PRKNRKNKKQKQKQQAPQNNTNQKKQPPKKK 91


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,325,966
Number of Sequences: 219361
Number of extensions: 442869
Number of successful extensions: 1551
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)