ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.66
2dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.66
3gb|AF027390.1|AF027390 Homo sapiens 7q telomere, complete sequence 42 0.66
4gb|AC122038.3| Mus musculus BAC clone RP24-427G24 from chromosom... 40 2.6
5gb|AC115919.14| Mus musculus chromosome 3, clone RP24-493L18, co... 40 2.6
6emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in ... 40 2.6
7dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
8dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 2.6
9gb|AC101812.19| Mus musculus chromosome 19, clone RP24-309C5, co... 40 2.6
10dbj|AP001475.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 40 2.6

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 23       ataattaaacatgcatgtaca 43
                |||||||||||||||||||||
Sbjct: 27694351 ataattaaacatgcatgtaca 27694371



 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 160      tagtaacaaattaaattaaa 179
                ||||||||||||||||||||
Sbjct: 24060636 tagtaacaaattaaattaaa 24060655



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>dbj|AP004989.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:B1153E06
          Length = 174588

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    ataattaaacatgcatgtaca 43
             |||||||||||||||||||||
Sbjct: 43606 ataattaaacatgcatgtaca 43626



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>gb|AF027390.1|AF027390 Homo sapiens 7q telomere, complete sequence
          Length = 225432

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 8      caacaaagctgtgatataattaaacatgcatgt 40
              |||||||||||||  |||||||||| |||||||
Sbjct: 140022 caacaaagctgtggaataattaaacctgcatgt 140054



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>gb|AC122038.3| Mus musculus BAC clone RP24-427G24 from chromosome 3, complete sequence
          Length = 188751

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     attaaacatgcatgtacacc 45
              ||||||||||||||||||||
Sbjct: 182473 attaaacatgcatgtacacc 182492



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>gb|AC115919.14| Mus musculus chromosome 3, clone RP24-493L18, complete sequence
          Length = 195790

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    attaaacatgcatgtacacc 45
             ||||||||||||||||||||
Sbjct: 38994 attaaacatgcatgtacacc 39013



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>emb|BX897692.16| Zebrafish DNA sequence from clone DKEY-34F9 in linkage group 9, complete
              sequence
          Length = 185941

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    caaattaaattaaaacccat 185
              ||||||||||||||||||||
Sbjct: 156721 caaattaaattaaaacccat 156702



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>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0429G06
          Length = 158321

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tagtaacaaattaaattaaa 179
             ||||||||||||||||||||
Sbjct: 70329 tagtaacaaattaaattaaa 70348



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>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    agtaacaaattaaattaaaa 180
              ||||||||||||||||||||
Sbjct: 166353 agtaacaaattaaattaaaa 166372



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>gb|AC101812.19| Mus musculus chromosome 19, clone RP24-309C5, complete sequence
          Length = 169224

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   aaattaaattaaaacccatt 186
             ||||||||||||||||||||
Sbjct: 19829 aaattaaattaaaacccatt 19810



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>dbj|AP001475.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:f133G20, telomere
            region, complete sequence
          Length = 13697

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 161  agtaacaaattaaattaaaa 180
            ||||||||||||||||||||
Sbjct: 7684 agtaacaaattaaattaaaa 7703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,981,358
Number of Sequences: 3902068
Number of extensions: 1981358
Number of successful extensions: 194551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194376
Number of HSP's gapped (non-prelim): 175
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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