ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77c03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
2dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
3dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
4dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
5dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clon... 88 2e-14
6dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 1e-12
7ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA 44 0.24
8emb|CR380954.1| Candida glabrata strain CBS138 chromosome H comp... 44 0.24
9gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete se... 44 0.24
10gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulan... 42 0.96
11ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 42 0.96
12gb|CP000114.1| Streptococcus agalactiae A909, complete genome 42 0.96
13emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chro... 42 0.96
14gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 10... 42 0.96
15emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 42 0.96
16gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromo... 42 0.96
17emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-52... 42 0.96
18gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 42 0.96
19ref|XM_476182.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
20ref|XM_476171.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
21ref|XM_476170.1| Oryza sativa (japonica cultivar-group), predic... 40 3.8
22gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
23ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transc... 40 3.8
24gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
25gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
26emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chr... 40 3.8
27gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 3.8
28gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hr... 40 3.8
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 3.8
30gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30... 40 3.8
31gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE ... 40 3.8
32gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 Hrp... 40 3.8
33gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-33... 40 3.8
34gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 ... 40 3.8
35gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 Hr... 40 3.8
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
37dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
38dbj|AK109415.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
39dbj|AK119543.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
40dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
41dbj|AK104940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
42dbj|AK104575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
43dbj|AK104531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
44dbj|AK104485.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
45dbj|AK104369.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
46dbj|AK104285.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
47dbj|AK104258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
48dbj|AK104216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
49dbj|AK104178.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
50dbj|AK104171.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
51dbj|AK103934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
52dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
53dbj|AK060149.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
54dbj|AK060134.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
55dbj|AK059729.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 179      acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 238
                |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 17363667 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 17363608

                           
Query: 239      tgaccctcccc 249
                || ||||||||
Sbjct: 17363607 tgcccctcccc 17363597



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                            
Query: 170      atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgagg 229
                ||||| || ||||||||||||||||||| |||||| ||| ||||| | |||||||| |||
Sbjct: 17373774 atgaacgccacgacgcggtccatgagctccttggccttggcgcactccggcttctccagg 17373715

                                    
Query: 230      aagaacacgtgaccctcccc 249
                ||||||||||| ||||||||
Sbjct: 17373714 aagaacacgtgcccctcccc 17373695



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                            
Query: 162      caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 221
                ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 17360617 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 17360558

                                                                            
Query: 222      tctcgaggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccc 281
                || | |||||||||||||| |||||||| || ||| || ||||||||| | | |||| ||
Sbjct: 17360557 tccccaggaagaacacgtgcccctccccctccgactcgagccacgccgcgctcccgcgcc 17360498

                       
Query: 282      acgcgct 288
                |||||||
Sbjct: 17360497 acgcgct 17360491



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 105/124 (84%), Gaps = 2/124 (1%)
 Strand = Plus / Minus

                                                                            
Query: 166      ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctc 225
                ||||||||| || |||||||||||||||||||||||||| ||||||||||| ||  || |
Sbjct: 17370864 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccccgg-atcgc 17370806

                                                                            
Query: 226      g-aggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgccccacg 284
                | |||||||| ||||| ||||| || || | | |||||||||||| | | |||| |||||
Sbjct: 17370805 gaaggaagaagacgtgcccctctccctccgtctcgtgccacgccgcgctcccgcgccacg 17370746

                    
Query: 285      cgct 288
                ||||
Sbjct: 17370745 cgct 17370742



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 105/126 (83%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                            
Query: 164      ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttc 223
                |||| |||||| || ||||||||||||| |||||||||||| ||||||||||| ||  ||
Sbjct: 17367490 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccccgg-atc 17367432

                                                                            
Query: 224      tcg-aggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccca 282
                 || |||||||| ||||| ||||| || || | | |||||||||||| | | |||| |||
Sbjct: 17367431 gcgaaggaagaagacgtgcccctctccctctgtctcgtgccacgccgcgctcccgcgcca 17367372

                      
Query: 283      cgcgct 288
                ||||||
Sbjct: 17367371 cgcgct 17367366
to top
>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054F02
          Length = 180651

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                         
Query: 179   acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 238
             |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 87580 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 87521

                        
Query: 239   tgaccctcccc 249
             || ||||||||
Sbjct: 87520 tgcccctcccc 87510



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                         
Query: 170   atgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgagg 229
             ||||| || ||||||||||||||||||| |||||| ||| ||||| | |||||||| |||
Sbjct: 97687 atgaacgccacgacgcggtccatgagctccttggccttggcgcactccggcttctccagg 97628

                                 
Query: 230   aagaacacgtgaccctcccc 249
             ||||||||||| ||||||||
Sbjct: 97627 aagaacacgtgcccctcccc 97608



 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                         
Query: 162   caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 221
             ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 84530 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 84471

                                                                         
Query: 222   tctcgaggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccc 281
             || | |||||||||||||| |||||||| || ||| || ||||||||| | | |||| ||
Sbjct: 84470 tccccaggaagaacacgtgcccctccccctccgactcgagccacgccgcgctcccgcgcc 84411

                    
Query: 282   acgcgct 288
             |||||||
Sbjct: 84410 acgcgct 84404



 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 105/124 (84%), Gaps = 2/124 (1%)
 Strand = Plus / Minus

                                                                         
Query: 166   ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctc 225
             ||||||||| || |||||||||||||||||||||||||| ||||||||||| ||  || |
Sbjct: 94777 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccccgg-atcgc 94719

                                                                         
Query: 226   g-aggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgccccacg 284
             | |||||||| ||||| ||||| || || | | |||||||||||| | | |||| |||||
Sbjct: 94718 gaaggaagaagacgtgcccctctccctccgtctcgtgccacgccgcgctcccgcgccacg 94659

                 
Query: 285   cgct 288
             ||||
Sbjct: 94658 cgct 94655



 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 105/126 (83%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                         
Query: 164   ccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttc 223
             |||| |||||| || ||||||||||||| |||||||||||| ||||||||||| ||  ||
Sbjct: 91403 ccggatatgaacgccacgacgcggtccaagagctgcttggccttgtcgcaccccgg-atc 91345

                                                                         
Query: 224   tcg-aggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccca 282
              || |||||||| ||||| ||||| || || | | |||||||||||| | | |||| |||
Sbjct: 91344 gcgaaggaagaagacgtgcccctctccctctgtctcgtgccacgccgcgctcccgcgcca 91285

                   
Query: 283   cgcgct 288
             ||||||
Sbjct: 91284 cgcgct 91279
to top
>dbj|AK067180.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013094M19, full
           insert sequence
          Length = 1117

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                       
Query: 179 acgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctcgaggaagaacacg 238
           |||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| |||
Sbjct: 979 acgacgcggtccatgagctgcttggccttgtcgcactccggcttctccaggaagaagacg 920

                      
Query: 239 tgaccctcccc 249
           || ||||||||
Sbjct: 919 tgcccctcccc 909
to top
>dbj|AK071569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023102G04, full
            insert sequence
          Length = 1519

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                        
Query: 162  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 221
            ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 1183 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 1124

                                                                        
Query: 222  tctcgaggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccc 281
            || | |||||||||||||| |||||||| || ||| || ||||||||| | | |||| ||
Sbjct: 1123 tccccaggaagaacacgtgcccctccccctccgactcgagccacgccgcgctcccgcgcc 1064

                   
Query: 282  acgcgct 288
            |||||||
Sbjct: 1063 acgcgct 1057
to top
>dbj|AK070294.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050O07, full
            insert sequence
          Length = 1333

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 106/127 (83%)
 Strand = Plus / Minus

                                                                        
Query: 162  caccggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggct 221
            ||||||||||||| || |||| ||| ||||||||||||||||| || |||||| | |  |
Sbjct: 1180 caccggctatgaacgccacgatgcgatccatgagctgcttggcattctcgcactccgaat 1121

                                                                        
Query: 222  tctcgaggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgcccc 281
            || | |||||||||||||| |||||||| || ||| || ||||||||| | | |||| ||
Sbjct: 1120 tccccaggaagaacacgtgcccctccccctccgactcgagccacgccgcgctcccgcgcc 1061

                   
Query: 282  acgcgct 288
            |||||||
Sbjct: 1060 acgcgct 1054
to top
>dbj|AK108359.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-C08, full
           insert sequence
          Length = 1059

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 105/124 (84%), Gaps = 2/124 (1%)
 Strand = Plus / Minus

                                                                       
Query: 166 ggctatgaaggcgacgacgcggtccatgagctgcttggcgttgtcgcacccgggcttctc 225
           ||||||||| || |||||||||||||||||||||||||| ||||||||||| ||  || |
Sbjct: 952 ggctatgaacgccacgacgcggtccatgagctgcttggccttgtcgcaccccgg-atcgc 894

                                                                       
Query: 226 g-aggaagaacacgtgaccctccccatcggacccgtgccacgccgnggtgccgccccacg 284
           | |||||||| ||||| ||||| || || | | |||||||||||| | | |||| |||||
Sbjct: 893 gaaggaagaagacgtgcccctctccctccgtctcgtgccacgccgcgctcccgcgccacg 834

               
Query: 285 cgct 288
           ||||
Sbjct: 833 cgct 830
to top
>ref|XM_446867.1| Candida glabrata CBS138, CAGL0H01573g partial mRNA
          Length = 1080

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 96  cagtgatgcagagcaggttcct 117
           ||||||||||||||||||||||
Sbjct: 288 cagtgatgcagagcaggttcct 309
to top
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence
          Length = 1050361

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 96     cagtgatgcagagcaggttcct 117
              ||||||||||||||||||||||
Sbjct: 153827 cagtgatgcagagcaggttcct 153806
to top
>gb|AC151826.8| Monodelphis domestica, clone XX-25F7, complete sequence
          Length = 152619

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 10     agaaaacttgaattccatctag 31
              ||||||||||||||||||||||
Sbjct: 104326 agaaaacttgaattccatctag 104347
to top
>gb|AY769950.1| Homo sapiens coagulation factor VIII, procoagulant component
             (hemophilia A) (F8) gene, complete cds
          Length = 192029

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    tcacctatttattcacaaata 58
             |||||||||||||||||||||
Sbjct: 31914 tcacctatttattcacaaata 31894
to top
>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 38     tcacctatttattcacaaata 58
              |||||||||||||||||||||
Sbjct: 158629 tcacctatttattcacaaata 158649
to top
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 37      atcacctatttattcacaaat 57
               |||||||||||||||||||||
Sbjct: 1002892 atcacctatttattcacaaat 1002872
to top
>emb|BX842564.3| Human DNA sequence from clone CTD-2037E7 on chromosome X Contains part
             of the F8 gene for coagulation factor VIII, procoagulant
             component (hemophilia A), complete sequence
          Length = 71989

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 38    tcacctatttattcacaaata 58
             |||||||||||||||||||||
Sbjct: 45724 tcacctatttattcacaaata 45744
to top
>gb|AE014234.1| Streptococcus agalactiae 2603V/R section 44 of 100 of the complete
             genome
          Length = 20692

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    atcacctatttattcacaaat 57
             |||||||||||||||||||||
Sbjct: 13796 atcacctatttattcacaaat 13776
to top
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 37    atcacctatttattcacaaat 57
             |||||||||||||||||||||
Sbjct: 16354 atcacctatttattcacaaat 16334
to top
>gb|AC163771.5| Pan troglodytes BAC clone CH251-57G17 from chromosome unknown,
           complete sequence
          Length = 179603

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 38  tcacctatttattcacaaata 58
           |||||||||||||||||||||
Sbjct: 929 tcacctatttattcacaaata 909
to top
>emb|AL645722.2|HSA524G17 Homo sapiens chromosome X clone RP11-524G17 map Xq28, complete sequence
          Length = 189940

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 38    tcacctatttattcacaaata 58
             |||||||||||||||||||||
Sbjct: 48232 tcacctatttattcacaaata 48212
to top
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 185    cggtccatgagctgcttggcg 205
              |||||||||||||||||||||
Sbjct: 965041 cggtccatgagctgcttggcg 965021
to top
>ref|XM_476182.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 780

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 207 cttctcgaggaagaacacgt 188
to top
>ref|XM_476171.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 720

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 96  cttctcgaggaagaacacgt 77
to top
>ref|XM_476170.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 813

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 207 cttctcgaggaagaacacgt 188
to top
>gb|AC137001.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0012L23, complete sequence
          Length = 121659

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   cttctcgaggaagaacacgt 239
             ||||||||||||||||||||
Sbjct: 25631 cttctcgaggaagaacacgt 25612
to top
>ref|XM_424700.1| PREDICTED: Gallus gallus similar to COUP transcription factor 1
           (LOC427108), mRNA
          Length = 937

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 atgaaggcgacgacgcggtc 189
           ||||||||||||||||||||
Sbjct: 509 atgaaggcgacgacgcggtc 490
to top
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15,
              complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    cttctcgaggaagaacacgt 239
              ||||||||||||||||||||
Sbjct: 177587 cttctcgaggaagaacacgt 177606



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    cttctcgaggaagaacacgt 239
              ||||||||||||||||||||
Sbjct: 175086 cttctcgaggaagaacacgt 175105
to top
>gb|AC108498.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1076_H08,
              complete sequence
          Length = 148348

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    cttctcgaggaagaacacgt 239
              ||||||||||||||||||||
Sbjct: 120466 cttctcgaggaagaacacgt 120447



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  cttctcgaggaagaacacgt 239
            ||||||||||||||||||||
Sbjct: 7513 cttctcgaggaagaacacgt 7532



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  cttctcgaggaagaacacgt 239
            ||||||||||||||||||||
Sbjct: 5012 cttctcgaggaagaacacgt 5031
to top
>emb|AL731856.14| Human DNA sequence from clone RP11-647P3 on chromosome 9, complete
             sequence
          Length = 51132

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    acatcacctatttattcacaaata 58
             ||||||||||| ||||||||||||
Sbjct: 32165 acatcacctatatattcacaaata 32188
to top
>gb|AE011665.1| Xanthomonas axonopodis pv. citri str. 306,  section 43 of 469 of the
            complete genome
          Length = 10257

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gagctgcttggcgttgtcgc 212
            ||||||||||||||||||||
Sbjct: 9919 gagctgcttggcgttgtcgc 9938
to top
>gb|AF499777.1| Xanthomonas axonopodis pv. glycines strain 8ra hrp pathogenicity
             island, complete sequence
          Length = 29206

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   gagctgcttggcgttgtcgc 212
             ||||||||||||||||||||
Sbjct: 20787 gagctgcttggcgttgtcgc 20768
to top
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    ggcgacgacgcggtccatga 194
              ||||||||||||||||||||
Sbjct: 661020 ggcgacgacgcggtccatga 661001
to top
>gb|DQ286698.1| Xanthomonas campestris pv. vignicola strain 81-30 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>gb|DQ286697.1| Xanthomonas smithii subsp. citri strain 50E HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>gb|DQ286696.1| Xanthomonas smithii subsp. smithii strain G34 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>gb|DQ286695.1| Xanthomonas campestris pv. begoniae strain 077-3382 HrpE (hrpE)
           gene, complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>gb|DQ286694.1| Xanthomonas campestris pv. vesicatoria strain 56 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>gb|DQ286693.1| Xanthomonas campestris pv. glycines strain 202 HrpE (hrpE) gene,
           complete cds
          Length = 282

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 gagctgcttggcgttgtcgc 212
           ||||||||||||||||||||
Sbjct: 270 gagctgcttggcgttgtcgc 251
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     cttctcgaggaagaacacgt 239
               ||||||||||||||||||||
Sbjct: 7165617 cttctcgaggaagaacacgt 7165598



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     cttctcgaggaagaacacgt 239
               ||||||||||||||||||||
Sbjct: 7052664 cttctcgaggaagaacacgt 7052683



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 220     cttctcgaggaagaacacgt 239
               ||||||||||||||||||||
Sbjct: 7050163 cttctcgaggaagaacacgt 7050182
to top
>dbj|AK109427.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-C03, full
           insert sequence
          Length = 1053

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 274 cttctcgaggaagaacacgt 255
to top
>dbj|AK109415.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-E02, full
           insert sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK119543.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-F03, full
           insert sequence
          Length = 1131

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK105947.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C07, full
           insert sequence
          Length = 1111

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 272 cttctcgaggaagaacacgt 253
to top
>dbj|AK104940.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G01, full
           insert sequence
          Length = 999

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104575.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A02, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104531.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A12, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104485.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-H12, full
           insert sequence
          Length = 981

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104369.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-E05, full
           insert sequence
          Length = 1115

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104285.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D05, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104258.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G02, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104216.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-B03, full
           insert sequence
          Length = 1109

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104178.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-E06, full
           insert sequence
          Length = 1126

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK104171.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-B01, full
           insert sequence
          Length = 1012

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK103934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F06, full
           insert sequence
          Length = 1035

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK061473.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E12, full
           insert sequence
          Length = 1088

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 274 cttctcgaggaagaacacgt 255
to top
>dbj|AK060149.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-D03, full
           insert sequence
          Length = 1056

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK060134.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D04, full
           insert sequence
          Length = 1131

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256
to top
>dbj|AK059729.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-E08, full
           insert sequence
          Length = 1336

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 220 cttctcgaggaagaacacgt 239
           ||||||||||||||||||||
Sbjct: 275 cttctcgaggaagaacacgt 256


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,988,067
Number of Sequences: 3902068
Number of extensions: 1988067
Number of successful extensions: 35523
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35359
Number of HSP's gapped (non-prelim): 160
length of query: 291
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 269
effective length of database: 17,147,199,772
effective search space: 4612596738668
effective search space used: 4612596738668
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top