ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet77a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Q300_MOUSE (Q02722) Protein Q300 32 0.59
2CR023_HUMAN (Q8NB54) Protein C18orf23 30 2.2
3SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3 29 2.9
4YE85_SCHPO (O14301) Hypothetical WD-repeat protein C9G1.05 in ch... 28 8.5

>Q300_MOUSE (Q02722) Protein Q300|
          Length = 77

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 90 WFSYTKIMYACVCQCVCLFRCI 25
          W   T + Y CVC CVC+  C+
Sbjct: 18 WEGETNLFYVCVCVCVCVCVCV 39



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>CR023_HUMAN (Q8NB54) Protein C18orf23|
          Length = 160

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 99  CRCW---FSYTKIMYACVCQCVCLFRCI 25
           C C    ++ ++ + ACVC CVCL+ C+
Sbjct: 42  CLCMTVAYTGSRCLGACVCVCVCLYVCV 69



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>SEPT3_MOUSE (Q9Z1S5) Neuronal-specific septin-3|
          Length = 465

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = -3

Query: 93  CWF--SYTKIMYACVCQCVCLFRCI-INK*LCVF 1
           CW+  S    +  CVC CVC++ C+ + +  CV+
Sbjct: 362 CWYLCSILSSVCVCVCVCVCMYVCMCVMESACVY 395



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>YE85_SCHPO (O14301) Hypothetical WD-repeat protein C9G1.05 in chromosome I|
          Length = 595

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 25  YTPKQTHTLT---HTRIHNFSIRKPTTALAMRS*ISIGG*DMEPANYHALL 168
           +  K TH  T    T IH +S+ +P   +AM++  S+G   +E  + + LL
Sbjct: 530 WNAKSTHLATASLDTNIHIYSVERPMKYIAMKNAHSLGATQVEWVSENELL 580


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,151,279
Number of Sequences: 219361
Number of extensions: 455103
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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