ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet77a08 |
|---|---|
| Clone Library Name | barley_pub |
>emb|Y15962.1|HVGLP1 Hordeum vulgare mRNA for germin-like protein 1 Length = 833 Score = 242 bits (122), Expect = 3e-61 Identities = 129/130 (99%), Gaps = 1/130 (0%) Strand = Plus / Minus Query: 53 ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaa-cagactcgg 111 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 814 ttgacaatcatcaaatgaaattgatatgaaaaattaaacacaacttgaaatcagactcgg 755 Query: 112 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 171 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 754 agttgacctcacaagcgcacgaacacatgcatcaaattaaaccgacacgctgacaccacg 695 Query: 172 acgacctttg 181 |||||||||| Sbjct: 694 acgacctttg 685
>gb|AC018509.6| Homo sapiens chromosome 10 clone RP11-307B23, complete sequence Length = 162877 Score = 46.1 bits (23), Expect = 0.036 Identities = 23/23 (100%) Strand = Plus / Plus Query: 64 caaatgaaattgatatgaaaaat 86 ||||||||||||||||||||||| Sbjct: 144794 caaatgaaattgatatgaaaaat 144816
>gb|AC137000.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035I01, complete sequence Length = 147813 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaattaaa 90 |||||||||||||||||||||| Sbjct: 3137 gaaattgatatgaaaaattaaa 3158
>gb|AC148171.16| Medicago truncatula clone mth2-30a2, complete sequence Length = 158384 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaattaaa 90 |||||||||||||||||||||| Sbjct: 58531 gaaattgatatgaaaaattaaa 58552
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaattaaa 90 |||||||||||||||||||||| Sbjct: 29518635 gaaattgatatgaaaaattaaa 29518656
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17, complete sequence Length = 134631 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaattaaa 90 |||||||||||||||||||||| Sbjct: 102905 gaaattgatatgaaaaattaaa 102926
>gb|AY146588.1| Triticum monococcum BAC clone 453N11, complete sequence Length = 285444 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cacgtgtgggcgttatcattt 36 ||||||||||||||||||||| Sbjct: 104360 cacgtgtgggcgttatcattt 104380
>gb|AY146587.1| Triticum turgidum subsp. durum BAC 107G22, complete sequence Length = 142018 Score = 42.1 bits (21), Expect = 0.57 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 cacgtgtgggcgttatcattt 36 ||||||||||||||||||||| Sbjct: 73257 cacgtgtgggcgttatcattt 73277
>gb|AC122011.3| Mus musculus chromosome 10 clone RP24-352E6, complete sequence Length = 181468 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 gaaattgatatgaaaaatta 88 |||||||||||||||||||| Sbjct: 13285 gaaattgatatgaaaaatta 13266
>gb|AC146316.3| Microcebus murinus clone CH257-437M14, complete sequence Length = 274705 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttgatatgaaaaattaaaca 92 |||||||||||||||||||| Sbjct: 59774 ttgatatgaaaaattaaaca 59793
>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence Length = 210751 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 61 catcaaatgaaattgatatgaaaa 84 |||||| ||||||||||||||||| Sbjct: 57747 catcaattgaaattgatatgaaaa 57770
>ref|XM_598627.2| PREDICTED: Bos taurus similar to CG6454-PB, isoform B (LOC520387), mRNA Length = 3625 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 80 gaaaaattaaacacaacttgaaac 103 |||||||||||||||| ||||||| Sbjct: 3157 gaaaaattaaacacaaattgaaac 3134
>gb|AC087514.2| Felis catus clone RP86-439N5, complete sequence Length = 151974 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattgat 77 |||||||||||||||||||| Sbjct: 60358 aatcatcaaatgaaattgat 60377
>gb|AC141846.3| Homo sapiens chromosome 16 clone CTB-55P19, complete sequence Length = 261450 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 tgaaattgatatgaaaaattaaacacaa 95 ||||| |||| ||||||||||||||||| Sbjct: 232770 tgaaagtgatctgaaaaattaaacacaa 232743
>gb|AC115290.5| Mus musculus BAC clone RP23-65M10 from chromosome 10, complete sequence Length = 245623 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 tgaaaaattaaacacaacttgaaa 102 ||||||||||||||||| |||||| Sbjct: 225998 tgaaaaattaaacacaaattgaaa 226021
>gb|AC100120.9| Mus musculus chromosome 10, clone RP23-40I1, complete sequence Length = 236895 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaatta 88 |||||||||||||||||||| Sbjct: 38058 gaaattgatatgaaaaatta 38077
>gb|AC114553.6| Mus musculus chromosome 5, clone RP23-408M16, complete sequence Length = 198281 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aatgaaattgatatgaaaaa 85 |||||||||||||||||||| Sbjct: 195204 aatgaaattgatatgaaaaa 195185
>emb|BX322613.6| Human DNA sequence from clone RP11-745D9 on chromosome 10 Contains a CpG island, complete sequence Length = 191752 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattgat 77 |||||||||||||||||||| Sbjct: 40708 aatcatcaaatgaaattgat 40727
>emb|AL590225.4| Human DNA sequence from clone RP11-358H7 on chromosome 6 Contains part of the gene for a novel protein highly similar to FLJ30899, complete sequence Length = 65114 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 aattgatatgaaaaattaaa 90 |||||||||||||||||||| Sbjct: 1289 aattgatatgaaaaattaaa 1270
>emb|AL161440.9| Human DNA sequence from clone RP1-210G8 on chromosome 6, complete sequence Length = 81780 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tgaaaaattaaacacaactt 98 |||||||||||||||||||| Sbjct: 54905 tgaaaaattaaacacaactt 54886
>emb|AL031601.4|HSY237C10 Human DNA sequence from clone XX-Y237C10 on chromosome 10 Contains a poly(A) binding protein, cytoplasmic 1 (PABPC1) pseudogene, an Ig kappa chain precursor V region pseudogene, a pseudogene similar to part of kinase suppressor of ras (KSR) and four CpG islands, complete sequence Length = 197700 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattgat 77 |||||||||||||||||||| Sbjct: 760 aatcatcaaatgaaattgat 779
>gb|AC161185.5| Mus musculus chromosome 5, clone RP23-297D16, complete sequence Length = 206099 Score = 40.1 bits (20), Expect = 2.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 61 catcaaatgaaattgatatgaaaa 84 |||||| ||||||||||||||||| Sbjct: 2381 catcaattgaaattgatatgaaaa 2358
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaattaa 89 |||||||||||||||||||| Sbjct: 281659 aaattgatatgaaaaattaa 281678
>gb|AC158753.8| Mus musculus chromosome 5, clone RP23-301E24, complete sequence Length = 190368 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 66 aatgaaattgatatgaaaaa 85 |||||||||||||||||||| Sbjct: 32566 aatgaaattgatatgaaaaa 32547
>gb|AC068304.33| Homo sapiens 12 BAC RP11-515A6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155413 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 tgaaaaattaaacacaactt 98 |||||||||||||||||||| Sbjct: 18496 tgaaaaattaaacacaactt 18477
>gb|AC092721.2| Homo sapiens chromosome 16 clone RP11-514P19, complete sequence Length = 201382 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 tgaaattgatatgaaaaattaaacacaa 95 ||||| |||| ||||||||||||||||| Sbjct: 194536 tgaaagtgatctgaaaaattaaacacaa 194509
>gb|AC140831.3| Homo sapiens chromosome 16 clone RP11-907K12, complete sequence Length = 96984 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 68 tgaaattgatatgaaaaattaaacacaa 95 ||||| |||| ||||||||||||||||| Sbjct: 28681 tgaaagtgatctgaaaaattaaacacaa 28708
>gb|AC092374.4| Homo sapiens chromosome 16 clone RP11-637I8, complete sequence Length = 150962 Score = 40.1 bits (20), Expect = 2.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 68 tgaaattgatatgaaaaattaaacacaa 95 ||||| |||| ||||||||||||||||| Sbjct: 92388 tgaaagtgatctgaaaaattaaacacaa 92361
>gb|AC026131.4| Homo sapiens chromosome 11, clone RP11-458M15, complete sequence Length = 174688 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aatcatcaaatgaaattgat 77 |||||||||||||||||||| Sbjct: 102969 aatcatcaaatgaaattgat 102950
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaattaa 89 |||||||||||||||||||| Sbjct: 282959 aaattgatatgaaaaattaa 282978
>gb|AC007446.8|AC007446 Homo sapiens, clone hRPK.67_A_1, complete sequence Length = 177471 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 tgaaaaattaaacacaactt 98 |||||||||||||||||||| Sbjct: 126735 tgaaaaattaaacacaactt 126754
>gb|DP000022.1| Microcebus murinus target 1 genomic scaffold Length = 1595145 Score = 40.1 bits (20), Expect = 2.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 ttgatatgaaaaattaaaca 92 |||||||||||||||||||| Sbjct: 631265 ttgatatgaaaaattaaaca 631284
>gb|AC152494.1| Zea mays BAC clone Z418K17, complete sequence Length = 195448 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 79 tgaaaaattaaacacaacttgaa 101 ||||| ||||||||||||||||| Sbjct: 65173 tgaaatattaaacacaacttgaa 65195
>ref|XM_628995.1| Dictyostelium discoideum hypothetical protein (DDB0191996), partial mRNA Length = 2070 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 67 atgaaattgatatgaaaaattaa 89 ||||||||||| ||||||||||| Sbjct: 408 atgaaattgatttgaaaaattaa 386
>gb|AC133880.7| Mus musculus chromosome 15, clone RP24-142B13, complete sequence Length = 135091 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 caaatgaaattgatatgaaaaat 86 ||||||||||||| ||||||||| Sbjct: 46158 caaatgaaattgaaatgaaaaat 46136
>gb|AC159310.3| Mus musculus BAC clone RP23-158N20 from chromosome 6, complete sequence Length = 222024 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 81 aaaaattaaacacaacttg 99 ||||||||||||||||||| Sbjct: 37265 aaaaattaaacacaacttg 37247
>gb|AY136628.2| Petunia integrifolia subsp. inflata S2 self-incompatibility ribonuclease (S2-RNase) and S2-locus F-box protein (SLF2) genes, complete cds Length = 328473 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aattaaacacaacttgaaa 102 ||||||||||||||||||| Sbjct: 311501 aattaaacacaacttgaaa 311483 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 84 aattaaacacaacttgaaa 102 ||||||||||||||||||| Sbjct: 292749 aattaaacacaacttgaaa 292731
>ref|XM_705484.1| Candida albicans SC5314 hypothetical protein (CaO19.8803), mRNA Length = 1344 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 52 aatcatcaaatgaaattga 70
>ref|XM_705473.1| Candida albicans SC5314 hypothetical protein (CaO19.1215), mRNA Length = 1344 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 52 aatcatcaaatgaaattga 70
>gb|AC135239.3| Mus musculus BAC clone RP23-324D2 from chromosome 3, complete sequence Length = 190178 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 caaatgaaattgatatgaa 82 ||||||||||||||||||| Sbjct: 61458 caaatgaaattgatatgaa 61440
>gb|AC132581.4| Mus musculus BAC clone RP24-390D8 from chromosome 6, complete sequence Length = 172240 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 aaaaattaaacacaacttg 99 ||||||||||||||||||| Sbjct: 78588 aaaaattaaacacaacttg 78606
>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence Length = 206029 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 205501 aaattgatatgaaaaatta 205483
>gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, complete sequence Length = 120644 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 52722 aaattgatatgaaaaatta 52740
>gb|AC132227.3| Mus musculus BAC clone RP24-573O22 from chromosome 8, complete sequence Length = 145732 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 64 caaatgaaattgatatgaaaaat 86 ||||||||||| ||||||||||| Sbjct: 80360 caaatgaaatttatatgaaaaat 80338
>gb|AC144508.3| Mus musculus BAC clone RP24-152C23 from chromosome 15, complete sequence Length = 155524 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 84 aattaaacacaacttgaaa 102 ||||||||||||||||||| Sbjct: 36865 aattaaacacaacttgaaa 36883
>gb|AC025448.6| Homo sapiens chromosome 5 clone CTD-2113L7, complete sequence Length = 164190 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 69 gaaattgatatgaaaaattaaacacaa 95 ||||||||||| |||||||||| |||| Sbjct: 75515 gaaattgatatcaaaaattaaaaacaa 75541
>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence Length = 207475 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 tgatatgaaaaattaaaca 92 ||||||||||||||||||| Sbjct: 73480 tgatatgaaaaattaaaca 73462
>gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, complete sequence Length = 135955 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 95749 aaattgatatgaaaaatta 95767
>ref|XM_724036.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01377) partial mRNA Length = 1593 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aaatgaaattgatatgaaa 83 ||||||||||||||||||| Sbjct: 708 aaatgaaattgatatgaaa 726
>ref|XM_724139.1| Plasmodium yoelii yoelii str. 17XNL mature parasite-infected erythrocyte surface antigen (PY01460) partial mRNA Length = 3144 Score = 38.2 bits (19), Expect = 8.9 Identities = 28/31 (90%) Strand = Plus / Plus Query: 76 atatgaaaaattaaacacaacttgaaacaga 106 ||||||||||| ||||| |||||||| |||| Sbjct: 1997 atatgaaaaatgaaacaaaacttgaagcaga 2027
>ref|XM_725138.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY02358) partial mRNA Length = 765 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 tgacaatcatcaaatgaaa 72 ||||||||||||||||||| Sbjct: 743 tgacaatcatcaaatgaaa 725
>gb|AC007384.3| Homo sapiens BAC clone RP11-325F22 from 7, complete sequence Length = 170842 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 155995 aaattgatatgaaaaatta 156013
>gb|AC092099.4| Homo sapiens BAC clone RP11-616A20 from 7, complete sequence Length = 33234 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 14219 aaattgatatgaaaaatta 14237
>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold Length = 574594 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 192423 caatcatcaaatgaaattg 192441
>ref|XM_675135.1| Plasmodium berghei strain ANKA hypothetical protein (PB000851.00.0) partial mRNA Length = 1581 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 65 aaatgaaattgatatgaaa 83 ||||||||||||||||||| Sbjct: 690 aaatgaaattgatatgaaa 708
>gb|AC127168.17| Medicago truncatula clone mth2-15m13, complete sequence Length = 117770 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 114815 aaattgatatgaaaaatta 114797
>emb|Z93016.2|HS211D12 Human DNA sequence from clone RP1-211D12 on chromosome 20q12-13.2 Contains the 3' end of the STK4 gene encoding serine/threonine kinase 4, the KCNS1 gene for potassium voltage-gated channel, delayed-rectifier (subfamily S, member 1), the WFDC5 gene for WAP four-disulfide core domain 5, the WFDC12 gene for WAP four-disulfide core domain 12 and a CpG island, complete sequence Length = 126270 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 26174 caatcatcaaatgaaattg 26192
>gb|AC129779.2| Homo sapiens BAC clone RP11-1360O11 from UL, complete sequence Length = 28549 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 3329 aatcatcaaatgaaattga 3311
>emb|AL136146.10| Human DNA sequence from clone RP5-916O11 on chromosome 11p12-13, complete sequence Length = 106073 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 attgatatgaaaaattaaacaca 94 ||||| ||||||||||||||||| Sbjct: 12315 attgaaatgaaaaattaaacaca 12293
>emb|AL133173.20| Human DNA sequence from clone RP11-453N3 on chromosome 10 Contains a RING finger protein 18 (RNF18) pseudogene, an actin-related protein 3 homolog (yeast) (ACTR3) pseudogene, a poly(A) cytoplasmic binding protein 3 (PABPC3) pseudogene, a gene for a novel protein similar to ATP-binding cassette sub-family D (ALD) member 1 (ABCD1), two novel genes and two CpG islands, complete sequence Length = 206192 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 191381 aatcatcaaatgaaattga 191363
>emb|AL035691.17|HS249F5 Human DNA sequence from clone RP1-249F5 on chromosome 6q26-27 Contains a novel gene, the MAS1 oncogene, the 5' end of the IGF2R gene for insulin-like growth factor 2 receptor (cation-independent mannose-6 phosphate receptor, Insulin-like growth factor-2 receptor (mannose-6-phosphate receptor, cation-independent)) (MPRI, CD222, CIMPR, M6P-R) and two CpG islands, complete sequence Length = 129968 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 80 gaaaaattaaacacaactt 98 ||||||||||||||||||| Sbjct: 41605 gaaaaattaaacacaactt 41623
>emb|AL109839.11|HSJ1069P2 Human DNA sequence from clone RP5-1069P2 on chromosome 20 Contains the the 3' end of the C20orf119 gene for chromosome 20 open reading frame 119, the TOMM34 gene for translocase of outer mitochondrial membrane 34, a novel gene, the 5' end of the STK4 gene for serine/threonine kinase 4 and a CpG island, complete sequence Length = 109575 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 8123 caatcatcaaatgaaattg 8105
>emb|AL022160.1|HS33F8 Human DNA sequence from clone RP6-33F8 on chromosome Xq21.1-21.3 Contains the 5' end of a novel gene (FLJ30678), complete sequence Length = 134474 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 tcaaatgaaattgatatga 81 ||||||||||||||||||| Sbjct: 93826 tcaaatgaaattgatatga 93808
>gb|AC136932.4| Homo sapiens chromosome 16 clone CTD-2522B17, complete sequence Length = 171882 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 132346 aatcatcaaatgaaattga 132364 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 129023 aatcatcaaatgaaattga 129041 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 128158 aatcatcaaatgaaattga 128176
>gb|AC163212.3| Mus musculus chromosome 3, clone RP24-102O2, complete sequence Length = 199319 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 64 caaatgaaattgatatgaa 82 ||||||||||||||||||| Sbjct: 31898 caaatgaaattgatatgaa 31880
>gb|AY293855.1| Homo sapiens insulin-like growth factor 2 receptor (IGF2R) gene, complete cds Length = 139947 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gaaaaattaaacacaactt 98 ||||||||||||||||||| Sbjct: 3613 gaaaaattaaacacaactt 3595
>emb|BX664732.7| Mouse DNA sequence from clone RP23-452F17 on chromosome X, complete sequence Length = 87723 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 aaatgaaattgatatgaaa 83 ||||||||||||||||||| Sbjct: 33317 aaatgaaattgatatgaaa 33299
>gb|AC110072.3| Homo sapiens BAC clone RP11-18C16 from 4, complete sequence Length = 188672 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 56114 aatcatcaaatgaaattga 56132
>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome Length = 5057531 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 125 agcgcacgaacacatgcatcaaattaa 151 |||||||||||||||||| ||| |||| Sbjct: 4160913 agcgcacgaacacatgcaacaacttaa 4160939
>gb|AC092421.2| Homo sapiens chromosome 3 clone RP11-476A24, complete sequence Length = 160726 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tgaaattgatatgaaaaat 86 ||||||||||||||||||| Sbjct: 40670 tgaaattgatatgaaaaat 40688
>gb|AC008871.5| Homo sapiens chromosome 5 clone CTD-2197I11, complete sequence Length = 174138 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 154447 aaattgatatgaaaaatta 154465
>gb|DP000036.1| Papio anubis target 106 genomic scaffold Length = 492848 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 70292 caatcatcaaatgaaattg 70310
>gb|DP000037.1| Pan troglodytes target 106 genomic scaffold Length = 302717 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 58048 caatcatcaaatgaaattg 58066
>gb|DP000041.1| Gorilla gorilla gorilla target 106 genomic scaffold Length = 355851 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 78583 caatcatcaaatgaaattg 78601
>gb|DP000043.1| Macaca mulatta target 106 genomic scaffold Length = 373358 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 69857 caatcatcaaatgaaattg 69875
>gb|DP000045.1| Pongo pygmaeus target 106 genomic scaffold Length = 644818 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 170610 caatcatcaaatgaaattg 170628
>gb|DP000046.1| Aotus nancymaae target 106 genomic scaffold Length = 387541 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 89595 caatcatcaaatgaaattg 89613
>gb|DP000048.1| Cercopithecus aethiops target 106 genomic scaffold Length = 583711 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattg 75 ||||||||||||||||||| Sbjct: 198164 caatcatcaaatgaaattg 198182
>gb|AF069333.2|AF069333 Homo sapiens insulin-like growth factor II receptor (IGF2R) gene, partial cds Length = 138376 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gaaaaattaaacacaactt 98 ||||||||||||||||||| Sbjct: 3323 gaaaaattaaacacaactt 3305
>gb|AF348209.1|AF348209 Homo sapiens IGF2R gene, complete cds Length = 137436 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gaaaaattaaacacaactt 98 ||||||||||||||||||| Sbjct: 2383 gaaaaattaaacacaactt 2365
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 attgatatgaaaaattaaa 90 ||||||||||||||||||| Sbjct: 3778673 attgatatgaaaaattaaa 3778691
>gb|AC146179.2| Pan troglodytes BAC clone RP43-36B22 from chromosome 7, complete sequence Length = 159208 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 154245 aatcatcaaatgaaattga 154263
>gb|AC144895.2| Homo sapiens BAC clone RP11-399H16 from 2, complete sequence Length = 153799 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aatcatcaaatgaaattga 76 ||||||||||||||||||| Sbjct: 7174 aatcatcaaatgaaattga 7156
>gb|AC084520.1|CBRG18K16 Caenorhabditis briggsae cosmid G18K16, complete sequence Length = 41648 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 33689 aaattgatatgaaaaatta 33707
>gb|AC007764.2|AC007764 Genomic sequence for Arabidopsis thaliana BAC F22C12 from chromosome I, complete sequence Length = 111222 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 134 acacatgcatcaaattaaa 152 ||||||||||||||||||| Sbjct: 79512 acacatgcatcaaattaaa 79530
>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence Length = 152913 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 74 tgatatgaaaaattaaacacaac 96 |||||||||||| |||||||||| Sbjct: 48902 tgatatgaaaaactaaacacaac 48924
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 atgaaattgatatgaaaaa 85 ||||||||||||||||||| Sbjct: 388721 atgaaattgatatgaaaaa 388703
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 38.2 bits (19), Expect = 8.9 Identities = 25/27 (92%) Strand = Plus / Plus Query: 57 caatcatcaaatgaaattgatatgaaa 83 |||| |||||||||||||||| ||||| Sbjct: 234993 caattatcaaatgaaattgatttgaaa 235019
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 attgatatgaaaaattaaa 90 ||||||||||||||||||| Sbjct: 17785 attgatatgaaaaattaaa 17803
>emb|BX005357.10| Zebrafish DNA sequence from clone CH211-120C8, complete sequence Length = 159670 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 gaaattgatatgaaaaatt 87 ||||||||||||||||||| Sbjct: 14221 gaaattgatatgaaaaatt 14203
>emb|BX682540.5| Mouse DNA sequence from clone RP23-383O14 on chromosome X, complete sequence Length = 191028 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 aaatgaaattgatatgaaa 83 ||||||||||||||||||| Sbjct: 18248 aaatgaaattgatatgaaa 18230
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0050F10 Length = 151986 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 attgatatgaaaaattaaa 90 ||||||||||||||||||| Sbjct: 123024 attgatatgaaaaattaaa 123042
>emb|AL954129.11| Zebrafish DNA sequence from clone CH211-200P22 in linkage group 24, complete sequence Length = 161275 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 attgatatgaaaaattaaa 90 ||||||||||||||||||| Sbjct: 35025 attgatatgaaaaattaaa 35043
>emb|AL671630.10| Mouse DNA sequence from clone RP23-327E13 on chromosome X, complete sequence Length = 173634 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 aaatgaaattgatatgaaa 83 ||||||||||||||||||| Sbjct: 86808 aaatgaaattgatatgaaa 86790
>gb|AC002430.1|AC002430 Human BAC clone CTB-66D11 from 7q22, complete sequence Length = 140856 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 70 aaattgatatgaaaaatta 88 ||||||||||||||||||| Sbjct: 136512 aaattgatatgaaaaatta 136530
>gb|U58761.2| Caenorhabditis elegans cosmid C01F1, complete sequence Length = 39188 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 80 gaaaaattaaacacaacttgaaa 102 |||||||||||||||| |||||| Sbjct: 36345 gaaaaattaaacacaaattgaaa 36367
>emb|CR318631.5| Zebrafish DNA sequence from clone DKEY-207D5 in linkage group 18, complete sequence Length = 189711 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 atcaaatgaaattgatatg 80 ||||||||||||||||||| Sbjct: 114131 atcaaatgaaattgatatg 114113
>emb|BX649507.3| Zebrafish DNA sequence from clone CH211-154H20 in linkage group 18, complete sequence Length = 166185 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 atcaaatgaaattgatatg 80 ||||||||||||||||||| Sbjct: 40816 atcaaatgaaattgatatg 40834
>emb|AL929504.9| Zebrafish DNA sequence from clone CH211-155A11 in linkage group 4, complete sequence Length = 160087 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 acatgcatcaaattaaacc 154 ||||||||||||||||||| Sbjct: 125058 acatgcatcaaattaaacc 125040
>emb|BX000347.7| Zebrafish DNA sequence from clone DKEY-66C4 in linkage group 18, complete sequence Length = 155713 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 atcaaatgaaattgatatg 80 ||||||||||||||||||| Sbjct: 50870 atcaaatgaaattgatatg 50888
>emb|Z70308.1|CEF49E11 Caenorhabditis elegans Cosmid F49E11, complete sequence Length = 32458 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 71 aattgatatgaaaaattaa 89 ||||||||||||||||||| Sbjct: 11138 aattgatatgaaaaattaa 11156
>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence Length = 239743 Score = 38.2 bits (19), Expect = 8.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 tgatatgaaaaattaaaca 92 ||||||||||||||||||| Sbjct: 196850 tgatatgaaaaattaaaca 196832
>gb|AC090692.9| Homo sapiens chromosome 11, clone RP11-698N11, complete sequence Length = 179494 Score = 38.2 bits (19), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 attgatatgaaaaattaaacaca 94 ||||| ||||||||||||||||| Sbjct: 162656 attgaaatgaaaaattaaacaca 162634 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,712,789 Number of Sequences: 3902068 Number of extensions: 1712789 Number of successful extensions: 128220 Number of sequences better than 10.0: 103 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127522 Number of HSP's gapped (non-prelim): 697 length of query: 181 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 159 effective length of database: 17,147,199,772 effective search space: 2726404763748 effective search space used: 2726404763748 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
