>gb|AY206371.1| Triticum aestivum photosystem II polypeptide mRNA, partial cds;
           nuclear gene for chloroplast product
          Length = 481

 Score = 71.9 bits (36), Expect = 5e-10
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                           
Query: 99  gtgttacaggtagatgctttcttagccggcgagagcgctggtattgta 146
           |||||||| ||||||||| ||||||||||||||||||||||| |||||
Sbjct: 323 gtgttacacgtagatgctctcttagccggcgagagcgctggtgttgta 276



 Score = 61.9 bits (31), Expect = 5e-07
 Identities = 64/74 (86%), Gaps = 2/74 (2%)
 Strand = Plus / Minus

                                                                       
Query: 13  ccatctgttcggatgaattactttgcaccgttgatgacatacatgcacatta--tagcta 70
           |||||||||||||| |||||||||||| |||||||  ||||||| ||||  |  ||||||
Sbjct: 425 ccatctgttcggatcaattactttgcatcgttgattgcatacattcacaggaggtagcta 366

                         
Query: 71  cgtagattacagag 84
            |||||||||||||
Sbjct: 365 tgtagattacagag 352

>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 18      tgttcggatgaattactttg 37
               ||||||||||||||||||||
Sbjct: 1162207 tgttcggatgaattactttg 1162188

>gb|AC127547.2| Mus musculus BAC clone RP24-498C13 from chromosome 8, complete
           sequence
          Length = 151070

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  gttgatgacatacatgcaca 61
           ||||||||||||||||||||
Sbjct: 695 gttgatgacatacatgcaca 714

>gb|AC113123.8| Mus musculus chromosome 8, clone RP23-349O15, complete sequence
          Length = 213829

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    gttgatgacatacatgcaca 61
             ||||||||||||||||||||
Sbjct: 30228 gttgatgacatacatgcaca 30209

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 43       ttgatgacatacatgcacattata 66
                |||||||||||||||| |||||||
Sbjct: 22335996 ttgatgacatacatgctcattata 22335973



 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 100    tgttacaggtagatgcttt 118
              |||||||||||||||||||
Sbjct: 553261 tgttacaggtagatgcttt 553279

>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0566A10
          Length = 174367

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 43     ttgatgacatacatgcacattata 66
              |||||||||||||||| |||||||
Sbjct: 114419 ttgatgacatacatgctcattata 114396

>ref|XM_480562.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 616

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 120 ttagccggcgagagcgctggtattgta 146
           |||||||||||| |||||||| |||||
Sbjct: 477 ttagccggcgagggcgctggtgttgta 451

>ref|XM_507163.1| PREDICTED Oryza sativa (japonica cultivar-group), P0556A11.19 mRNA
          Length = 711

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 120 ttagccggcgagagcgctggtattgta 146
           |||||||||||| |||||||| |||||
Sbjct: 473 ttagccggcgagggcgctggtgttgta 447

>gb|AC121979.3| Mus musculus BAC clone RP24-289L14 from chromosome 9, complete sequence
          Length = 155274

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    agatgctttcttagccggc 128
              |||||||||||||||||||
Sbjct: 133218 agatgctttcttagccggc 133236

>emb|AL390834.24| Human DNA sequence from clone RP11-468L18 on chromosome 10 Contains an
             unactive progesterone receptor, 23 kD (TEBP) pseudogene,
             complete sequence
          Length = 124557

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 42    gttgatgacatacatgcacatta 64
             ||||| |||||||||||||||||
Sbjct: 28516 gttgaggacatacatgcacatta 28494

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                          
Query: 120     ttagccggcgagagcgctggtattgta 146
               |||||||||||| |||||||| |||||
Sbjct: 5800357 ttagccggcgagggcgctggtgttgta 5800383

>dbj|AP002805.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0004I20
          Length = 94135

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   tgttacaggtagatgcttt 118
             |||||||||||||||||||
Sbjct: 29878 tgttacaggtagatgcttt 29896

>dbj|AP000616.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0514G12
          Length = 138929

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 100   tgttacaggtagatgcttt 118
             |||||||||||||||||||
Sbjct: 98769 tgttacaggtagatgcttt 98787

>dbj|AP004589.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0556A11
          Length = 138096

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 120   ttagccggcgagagcgctggtattgta 146
             |||||||||||| |||||||| |||||
Sbjct: 54502 ttagccggcgagggcgctggtgttgta 54528

>dbj|AK121083.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I15, full
           insert sequence
          Length = 711

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 120 ttagccggcgagagcgctggtattgta 146
           |||||||||||| |||||||| |||||
Sbjct: 473 ttagccggcgagggcgctggtgttgta 447

>dbj|AK105055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F10, full
           insert sequence
          Length = 640

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 120 ttagccggcgagagcgctggtattgta 146
           |||||||||||| |||||||| |||||
Sbjct: 501 ttagccggcgagggcgctggtgttgta 475

>gb|U86018.1|OSU86018 Oryza sativa photosystem II 10 kDa polypeptide mRNA, complete cds
          Length = 580

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                      
Query: 120 ttagccggcgagagcgctggtattgta 146
           |||||||||||| |||||||| |||||
Sbjct: 416 ttagccggcgagggcgctggtgttgta 390

>dbj|AB033662.1| Oryza sativa (japonica cultivar-group) DNA, chromosome 6, 2.7cM,
           RFLP marker, clone:G8017
          Length = 1695

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 100 tgttacaggtagatgcttt 118
           |||||||||||||||||||
Sbjct: 606 tgttacaggtagatgcttt 624


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 850,294
Number of Sequences: 3902068
Number of extensions: 850294
Number of successful extensions: 61990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61893
Number of HSP's gapped (non-prelim): 96
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)