ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet76h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha) 30 2.1
2VPS_PSINU (Q9SLX9) Phloroisovalerophenone synthase (EC 2.3.1.156... 29 2.8
3ENDD1_HUMAN (O94919) Endonuclease domain-containing 1 protein pr... 28 4.7
4GEM_PONPY (Q5R541) GTP-binding protein GEM 28 4.7
5GEM_HUMAN (P55040) GTP-binding protein GEM (GTP-binding mitogen-... 28 4.7
6ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hy... 28 8.0
7GTR11_HUMAN (Q9BYW1) Solute carrier family 2, facilitated glucos... 28 8.0

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 107 RNSSKQTWRTPETRRHTNGRSHQHMHKPRNGS 202
           R+ S+   R    RR+T  RSH H H+ R+ S
Sbjct: 53  RSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRS 84



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>VPS_PSINU (Q9SLX9) Phloroisovalerophenone synthase (EC 2.3.1.156)|
           (Valerophenone synthase)
           (3-methyl-1-(trihydroxyphenyl)butan-1-one synthase)
          Length = 406

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
 Frame = +3

Query: 87  KRKAHLEETAASKHGELRKH----VDIRMDGHINICTSRGTVAADDAKTGATEPSGGI 248
           KR+ H+ E     H  +R +    +D+R D  +      G VAAD+A     +P   I
Sbjct: 74  KRRMHINEDILEAHPSIRSYHDNSLDVRQDMLVEEVPKLGKVAADNAIAEWGQPKSNI 131



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>ENDD1_HUMAN (O94919) Endonuclease domain-containing 1 protein precursor (EC|
           3.1.30.-)
          Length = 500

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 218 LRIICCYRSSACAYVDVTVHSYVDV--FPEFAMFA 120
           LRI+CC   + C  + + V   VDV  FP + M A
Sbjct: 413 LRILCCLLKAICRVLSIPVRVLVDVATFPVYTMGA 447



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>GEM_PONPY (Q5R541) GTP-binding protein GEM|
          Length = 296

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 89  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CEDWSH*TKRW 244
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED  H  + W
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED--HCRRSW 58



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>GEM_HUMAN (P55040) GTP-binding protein GEM (GTP-binding mitogen-induced|
           T-cell protein) (RAS-like protein KIR)
          Length = 296

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 89  KKSTLGRNSSKQTWRTPETRRHTNGRSHQHMHKPRNGSSR*CEDWSH*TKRW 244
           ++ T+G    +Q W  P   RH   +   H +  RN  S   ED  H  + W
Sbjct: 9   RQGTVGMQPQQQRWSIPADGRHLMVQKEPHQYSHRNRHSATPED--HCRRSW 58



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>ACON_STRMU (Q59938) Aconitate hydratase (EC 4.2.1.3) (Citrate hydro-lyase)|
           (Aconitase)
          Length = 888

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 97  HTWKKQQQANMANSGNTSTYEWTVTSTYAQ 186
           H +   Q+ N   + N+  Y+W   STY Q
Sbjct: 611 HVFSDSQKWNQIETENSKNYQWNQVSTYIQ 640



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>GTR11_HUMAN (Q9BYW1) Solute carrier family 2, facilitated glucose transporter|
           member 11 (Glucose transporter type 11) (Glucose
           transporter type 10)
          Length = 496

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 216 SHHLLLPFLGLCIC 175
           SH L +PFLG+C+C
Sbjct: 434 SHFLYVPFLGVCVC 447


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,727,494
Number of Sequences: 219361
Number of extensions: 602743
Number of successful extensions: 1947
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1947
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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