ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet76h04 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 105 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 105 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 105 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 2.0 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +3 Query: 105 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +3 Query: 114 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 NG G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 188 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 310 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Mannosyltransferase- Length = 464 Score = 28.9 bits (63), Expect = 3.4 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +3 Query: 99 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 233 +TV + K PLD +H LF+ + S +PF R + P DP Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +2 Query: 188 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 310 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 28.9 bits (63), Expect = 3.4 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +2 Query: 65 QQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAAS 244 ++SR + S H R W + DQD S ST S+ S +D + RS A S Sbjct: 483 RRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSY---RSKSHSRSDSRGSSRSRAVS 539 Query: 245 SNPSR 259 + SR Sbjct: 540 KSSSR 544
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.5 bits (62), Expect = 4.5 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +3 Query: 102 TVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 T+ G G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 279 TIINEGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335
>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III| Length = 1150 Score = 28.5 bits (62), Expect = 4.5 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Frame = +2 Query: 44 ISNIGVLQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPL-------PLYSHLLCLK 190 ++N+G L S + K+EHH R +R ++ + L P SHLL ++ Sbjct: 474 LNNVGALYMSMKQYEKAEHHFKRAKERLEEQLNTDEGSLLLERRSAPEKSHLLTIR 529
>ALG1_PONPY (Q5R7A2) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) Length = 464 Score = 28.1 bits (61), Expect = 5.8 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +3 Query: 99 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRA 248 +TV + K PLD +H LF+ + +PF R + P DP R+ Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGGTHSPF---RARSEPEDPATERS 258
>RPOC_PEDAC (P77917) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1055 Score = 28.1 bits (61), Expect = 5.8 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +3 Query: 111 ENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 + +G +TR + R + I S ++P D + AIP+ PP LR GRF Sbjct: 196 KEASGQKRTRAVRRLDIIEAFIKSGNHP-DWMVMDAIPVMPPDLRPMVQLDGGRF 249
>Y2195_VIBPA (Q87MN6) UPF0209 protein VP2195| Length = 672 Score = 28.1 bits (61), Expect = 5.8 Identities = 11/32 (34%), Positives = 20/32 (62%) Frame = +2 Query: 38 IHISNIGVLQQSRRTVLKSEHHRTRKWDRFDQ 133 ++ SN+ L+++R LK ++H +W FDQ Sbjct: 25 VYFSNVNGLEETRYVFLK-QNHLPERWQEFDQ 55
>RLX3_STAAU (P14491) Protein rlx| Length = 330 Score = 27.7 bits (60), Expect = 7.6 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +2 Query: 62 LQQSRRTVLKSEHHRTRKWDRFDQDT 139 L+Q+RR +K + R ++W RF++ T Sbjct: 249 LEQARREKIKRDKEREKEWARFNRST 274
>PYGO1_HUMAN (Q9Y3Y4) Pygopus homolog 1| Length = 419 Score = 27.7 bits (60), Expect = 7.6 Identities = 17/74 (22%), Positives = 35/74 (47%) Frame = +2 Query: 38 IHISNIGVLQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLC 217 ++ SNI + +R + E+ R+ + + + + + P + R AAD C Sbjct: 266 VNQSNIELKNVNRNNAVNQENSRSSSTEATNNNPANGTQNKP--------RQPRGAADAC 317 Query: 218 YTDRSAAASSNPSR 259 T++S +S +P+R Sbjct: 318 TTEKSNKSSLHPNR 331
>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma| on chromosome 8) Length = 664 Score = 27.3 bits (59), Expect = 10.0 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 7/54 (12%) Frame = +2 Query: 137 TTSRSTPLPLYSHLLCLKSVRSAADLC-------YTDRSAAASSNPSRMSGTFP 277 T++R TP Y H LCL+ D C Y + +SN S +G P Sbjct: 556 TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSNNNGFIP 609
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 27.3 bits (59), Expect = 10.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +3 Query: 216 AIPIDPPQLRATQAGCQGRFRCVGDH 293 A+ + PP +R TQAG F+ V D+ Sbjct: 101 ALVVTPPYVRPTQAGLLAHFQAVADN 126
>DDL_THETN (Q8R778) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 389 Score = 27.3 bits (59), Expect = 10.0 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -2 Query: 235 GGSIGIAEIRGRSNGFEAEEMXXXXXXXXXXXRVLVEPVPFSCTVM 98 G SIGI++ + R F+A E+ + +P+ +C+VM Sbjct: 196 GSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241
>DCAM_DAUCA (Q9AXE3) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)| (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] Length = 361 Score = 27.3 bits (59), Expect = 10.0 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +2 Query: 56 GVLQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSV-RSAADLCYTDRS 232 G L + + + +KW + S T P+Y+ +C+ S+ R A + Y S Sbjct: 143 GKLGSGSKAYIMGGSDKQQKWHVYSACAASTRTLDPVYTMEMCMTSLNRDKASVFYKTNS 202 Query: 233 AAASS 247 ++A+S Sbjct: 203 SSATS 207
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 27.3 bits (59), Expect = 10.0 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +3 Query: 93 LNITVQENGT------GSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQ 254 L T QE G G K R + R + I+S +NP + IP+ PP+LR Sbjct: 268 LQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV-LDVIPVIPPELRPMV 326 Query: 255 AGCQGRF 275 GRF Sbjct: 327 QLDAGRF 333
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 27.3 bits (59), Expect = 10.0 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +3 Query: 93 LNITVQENGT------GSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQ 254 L T QE G G K R + R + I+S +NP + IP+ PP+LR Sbjct: 268 LQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV-LDVIPVIPPELRPMV 326 Query: 255 AGCQGRF 275 GRF Sbjct: 327 QLDAGRF 333
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 27.3 bits (59), Expect = 10.0 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +3 Query: 105 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 275 V +G G K R L R + + S ++P + IP+ PP+LR GRF Sbjct: 280 VIRDGKGQKKLRALKRLKVVAAFLRSGNDPAGMV-LDCIPVIPPELRPMVQLDGGRF 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,021,735 Number of Sequences: 219361 Number of extensions: 866399 Number of successful extensions: 2606 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2544 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2606 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
