ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet76g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specif... 29 2.8
2LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III) 29 3.7
3TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP... 28 6.3
4LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I) 28 6.3
5TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.... 28 6.3
6LGB2_MEDTR (P27993) Leghemoglobin 2 28 6.3
7CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al... 28 8.3
8CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ... 28 8.3
9CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel ... 28 8.3

>HBP1A_WHEAT (P23922) Transcription factor HBP-1a (Histone-specific|
           transcription factor HBP1)
          Length = 349

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +1

Query: 103 NGDPPLPSPASRKETEEQPDAGARSXXXXXXXXEWPG 213
           + DP  PS AS+   +EQP A   S        EWPG
Sbjct: 3   SNDPSTPSKASKPPEQEQPPA-TTSGTTAPVYPEWPG 38



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>LGB3_MEDSA (P14962) Leghemoglobin-3 (Leghemoglobin III)|
          Length = 146

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 212 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 105
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDSAGVQDSP 56



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>TAI12_MOUSE (Q8BGQ2) TGF-beta-induced apoptosis protein 12 (TAIP-12)|
          Length = 534

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 227 RAVLPPGHSVLVLVLVLERAPASGCSSVSFLEAG 126
           +A LPPG SVL      E   AS  SS S+L +G
Sbjct: 374 QAQLPPGSSVLCFTENSEHPAASPMSSPSYLNSG 407



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>LGB1_PEA (P02233) Leghemoglobin-1 (Leghemoglobin I)|
          Length = 147

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 212 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 105
           PG+S+L   +VLE+APA+     SFL+   G   SP
Sbjct: 21  PGYSILFYTIVLEKAPAAK-GLFSFLKDTAGVEDSP 55



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>TRPE_AERPE (Q9Y8T0) Anthranilate synthase component 1 (EC 4.1.3.27)|
           (Anthranilate synthase component I)
          Length = 438

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +1

Query: 106 GDPPLPSPASRKET 147
           GD PLP+PASRKE+
Sbjct: 145 GDTPLPAPASRKES 158



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>LGB2_MEDTR (P27993) Leghemoglobin 2|
          Length = 146

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -1

Query: 212 PGHSVLVLVLVLERAPASGCSSVSFLEAGEGRGGSP 105
           PG+SVL   ++LE+APA+     SFL+   G   SP
Sbjct: 22  PGNSVLFYTIILEKAPAAK-GMFSFLKDTAGVQDSP 56



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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 91   VNKNNGDPPLPSPASRKETEEQPDAG 168
            VNKN    PLP     K+ EE+ D G
Sbjct: 1137 VNKNANPDPLPKKEEEKKEEEEADPG 1162



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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2164

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 91   VNKNNGDPPLPSPASRKETEEQPDAG 168
            VNKN    PLP     K+ EE+ D G
Sbjct: 1089 VNKNANPDPLPKKEEEKKEEEEADPG 1114



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>CAC1A_HUMAN (O00555) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2505

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 91   VNKNNGDPPLPSPASRKETEEQPDAG 168
            VNKN    PLP     K+ EE+ D G
Sbjct: 1186 VNKNANPDPLPKKEEEKKEEEEDDRG 1211


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,098,823
Number of Sequences: 219361
Number of extensions: 469373
Number of successful extensions: 1001
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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