ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet76e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase ... 29 3.8
2ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase... 28 6.5

>GANA_HUMIN (P83691) Arabinogalactan endo-1,4-beta-galactosidase (EC 3.2.1.89)|
           (Endo-1,4-beta-galactanase) (Galactanase)
          Length = 332

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 107 QERPCEWPRECIDFVWKMYNFRQTLE**NRRPD*G 3
           Q  P  WP +  +  WK+YN+  TL+  NR  D G
Sbjct: 92  QTTPAGWPSDINNLAWKLYNY--TLDSMNRFADAG 124



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>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC|
           2.1.1.43) (Trithorax-related protein 3) (TRX-related
           protein 3) (Protein SET DOMAIN GROUP 2)
          Length = 2351

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +1

Query: 25  YYSNVCRKLYIFHTKSMHSRGHSQGLSCVIELLKRRKHDNYQISLKKRQVEHRPAS 192
           Y S+ CRKL    ++S+HS  +SQ  +   E L R  + +   SL+K   +H+ AS
Sbjct: 322 YGSSKCRKLSDDCSRSLHSDHYSQHSA---ERLYRDSYPSKNSSLEKYPRKHQDAS 374


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,035,168
Number of Sequences: 219361
Number of extensions: 489779
Number of successful extensions: 1342
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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