>KR121_HUMAN (P59990) Keratin-associated protein 12-1 (Keratin-associated|
           protein 12.1) (High sulfur keratin-associated protein
           12.1)
          Length = 96

 Score = 31.2 bits (69), Expect = 0.68
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
 Frame = -1

Query: 196 SCYTYVG---KACVCMNQRPRACDRARCLDVLCVIQECTRMGYAWMRRKEASIAYLALVC 26
           SCY  VG     CV ++ +P  C   RC   +CV   C  + YA    + +        C
Sbjct: 23  SCYIPVGCQSSVCVPVSFKPAVCVPVRCQSSVCVPVSCRPVVYAAPSCQSSG-------C 75

Query: 25  CCQ*CVSV 2
           C   C SV
Sbjct: 76  CQPSCTSV 83

>EF3_PNECA (P29551) Elongation factor 3 (EF-3)|
          Length = 1042

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 1   ELKHIIGNNKPKRDMRWM-LPSYASTHTPYGYTLESHTK 114
           E   ++G N  +++ RW+ LPS  +   P G  +ESH+K
Sbjct: 814 ECSFLVGENVGEKNERWVPLPSMNNEWLPRGELIESHSK 852

>NFRKB_HUMAN (Q6P4R8) Nuclear factor related to kappa-B-binding protein|
           (DNA-binding protein R kappa-B)
          Length = 1299

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +2

Query: 50  GCFLPTHPRIPHTGTLLNHTQNVETARAVARTRPLVHA-YACLAYVRVAASILL*QPKKA 226
           G  L + P +PH GT+L+   +     + A  R + H+  A L+ VRV A   L    + 
Sbjct: 760 GVLLVSSPTMPHLGTMLSPASSQTAPSSQAAARVVSHSGSAGLSQVRVVAQPSLPAVPQQ 819

Query: 227 SG 232
           SG
Sbjct: 820 SG 821

>CSK2D_ARATH (O81275) Casein kinase II subunit beta-3 (CK II beta-3)|
          Length = 276

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = -1

Query: 190 YTYVGKACVCMNQRPRACDRARCLDVLCVIQECTRMGYAWMRRKEASIAY 41
           Y    K    M ++ + CD  RC  V C  Q C  +G + + R      Y
Sbjct: 168 YILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIY 217

>SYV_TREPA (O83998) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 956

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -1

Query: 223 FFWLLQ*NTSCYTYVGKACVCMNQRPRACDRARCLDVLCVIQECT 89
           FFW    N+ C  YV +A  C  Q+P   ++ R   VLC + E T
Sbjct: 681 FFW----NSFCDWYV-EASKCSFQKPDEQEKDRAASVLCTLLEET 720

>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
 Frame = -1

Query: 208 Q*NTSCYTYVGKACVCMNQ---RPRACDR-----ARCLDVLCVIQECTRMGY 77
           Q N S +T++GK CV M+    +  A DR      +C  V C++++  +  Y
Sbjct: 25  QENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSY 76

>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)|
          Length = 505

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 8/52 (15%)
 Frame = -1

Query: 208 Q*NTSCYTYVGKACVCMNQ---RPRACDR-----ARCLDVLCVIQECTRMGY 77
           Q N S +T++GK CV M+    +  A DR      +C  V C++++  +  Y
Sbjct: 25  QENESLFTFLGKKCVTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNPQRSY 76

>MY31D_DROME (Q23978) Myosin IA (MIA) (Brush border myosin IA) (BBMIA)|
          Length = 1011

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 202 NTSCYTYVGKACVCMN 155
           N S YTY+G+ CV MN
Sbjct: 33  NGSIYTYIGEVCVSMN 48

>SYW_CLOTE (Q891C7) Tryptophanyl-tRNA synthetase (EC 6.1.1.2)|
           (Tryptophan--tRNA ligase) (TrpRS)
          Length = 338

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 286 SALDPSTDG*LLACHEPISASFFWLLQ*NTSCYTYVGK 173
           S LDP  +   +  H P      WLL    +C+TY+G+
Sbjct: 77  SGLDPEKNTLFIQSHVPAHTEAAWLL----NCFTYLGE 110

>PRM2_PIG (P19757) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 92

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 55  LPSYASTHTP-YGYTLESHTKRRDSARGRTHAA 150
           +P Y  TH   Y Y   SHT+RR S R R   A
Sbjct: 37  VPVYGRTHRGRYHYRHRSHTRRRRSCRRRRRRA 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,794,201
Number of Sequences: 219361
Number of extensions: 921647
Number of successful extensions: 2790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2790
length of database: 80,573,946
effective HSP length: 82
effective length of database: 62,586,344
effective search space used: 1502072256
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)