ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet76d05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467013.1| Oryza sativa (japonica cultivar-group), mRNA 105 1e-19
2dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
3dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 6e-18
4gb|BT016545.1| Zea mays clone Contig378 mRNA sequence 92 1e-15
5gb|AY104944.1| Zea mays PCO123267 mRNA sequence 92 1e-15
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
7dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
8gb|BT016790.1| Zea mays clone Contig623 mRNA sequence 74 3e-10
9ref|XM_473336.1| Oryza sativa (japonica cultivar-group), predic... 66 9e-08
10dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 9e-08
11gb|AY107480.1| Zea mays PCO126634 mRNA sequence 66 9e-08
12emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4,... 52 0.001
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
14dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
15ref|XM_569243.1| Cryptococcus neoformans var. neoformans JEC21 m... 42 1.2
16gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 1.2
17gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, com... 40 4.9
18gb|BC045275.1| Xenopus laevis hypothetical protein MGC64474, mRN... 40 4.9
19gb|BC054975.1| Xenopus laevis hypothetical protein MGC64474, mRN... 40 4.9
20gb|AC133462.18| Mus musculus chromosome 1, clone RP24-441D8, com... 40 4.9
21gb|AY550246.1| Paracoccidioides brasiliensis small G-protein GPA... 40 4.9 
>ref|XM_467013.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2113

 Score =  105 bits (53), Expect = 1e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                        
Query: 223  atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 282
            ||||| |||| |||||||||||| |||  ||||| || ||||||||   |||||||||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795

                                                                        
Query: 283  ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 342
             ||| ||||| ||||||| |||||||||||||||||| ||||| | ||  ||||||||||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735

                                     
Query: 343  tgataggatcggtaaggatgttctg 367
            |||| ||||| ||||| || |||||
Sbjct: 1734 tgatgggatctgtaagaatattctg 1710
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>dbj|AK102431.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093H17, full
            insert sequence
          Length = 2113

 Score =  105 bits (53), Expect = 1e-19
 Identities = 122/145 (84%)
 Strand = Plus / Minus

                                                                        
Query: 223  atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 282
            ||||| |||| |||||||||||| |||  ||||| || ||||||||   |||||||||||
Sbjct: 1854 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 1795

                                                                        
Query: 283  ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 342
             ||| ||||| ||||||| |||||||||||||||||| ||||| | ||  ||||||||||
Sbjct: 1794 tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 1735

                                     
Query: 343  tgataggatcggtaaggatgttctg 367
            |||| ||||| ||||| || |||||
Sbjct: 1734 tgatgggatctgtaagaatattctg 1710
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>dbj|AK059659.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-D09, full
           insert sequence
          Length = 418

 Score = 99.6 bits (50), Expect = 6e-18
 Identities = 110/130 (84%)
 Strand = Plus / Minus

                                                                       
Query: 223 atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 282
           ||||| |||| |||||||||||| |||  ||||| || ||||||||   |||||||||||
Sbjct: 139 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 80

                                                                       
Query: 283 ccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgtcgca 342
            ||| ||||| ||||||| |||||||||||||||||| ||||| | ||  ||||||||||
Sbjct: 79  tcttaagatgctcctgagaagccctagggttctcctgcaaatcgaccagtacctgtcgca 20

                     
Query: 343 tgataggatc 352
           |||| |||||
Sbjct: 19  tgatgggatc 10
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>gb|BT016545.1| Zea mays clone Contig378 mRNA sequence
          Length = 1331

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 218  tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 277
            |||||||||| |||||||||| |||||  |||  ||||| || ||||| ||    |||||
Sbjct: 1012 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 953

                                                                        
Query: 278  agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 337
            ||||| |||||| || ||||| || ||||| |||||||||||||||||  | | ||||||
Sbjct: 952  agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 893

                                          
Query: 338  tcgcatgataggatcggtaaggatgttctg 367
            || ||||||||| |||||||| ||||||||
Sbjct: 892  tctcatgatagggtcggtaagaatgttctg 863
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>gb|AY104944.1| Zea mays PCO123267 mRNA sequence
          Length = 1713

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 124/150 (82%)
 Strand = Plus / Minus

                                                                        
Query: 218  tgatcatctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactcc 277
            |||||||||| |||||||||| |||||  |||  ||||| || ||||| ||    |||||
Sbjct: 1399 tgatcatctcatttggactatcccagcacttacaagcttctgaatcttttgcataactcc 1340

                                                                        
Query: 278  agggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctg 337
            ||||| |||||| || ||||| || ||||| |||||||||||||||||  | | ||||||
Sbjct: 1339 agggttcttcaggtgctcctgggccgcccttgggttctcctggaaatcatttagcacctg 1280

                                          
Query: 338  tcgcatgataggatcggtaaggatgttctg 367
            || ||||||||| |||||||| ||||||||
Sbjct: 1279 tctcatgatagggtcggtaagaatgttctg 1250
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                            
Query: 223      atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 282
                ||||| |||| |||||||||||| |||  ||||| || ||||||||   |||||||||||
Sbjct: 25918106 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 25918047

                                                           
Query: 283      ccttcagatgatcctgagcagccctagggttctcctggaaatc 325
                 ||| ||||| ||||||| |||||||||||||||||| |||||
Sbjct: 25918046 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 25918004
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>dbj|AP005291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1282_H11
          Length = 143314

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 88/103 (85%)
 Strand = Plus / Minus

                                                                         
Query: 223   atctcgtttggactattccagcgtttatgagcttttggatcttctgtgccactccagggt 282
             ||||| |||| |||||||||||| |||  ||||| || ||||||||   |||||||||||
Sbjct: 69447 atctcatttgaactattccagcgcttacaagcttctgaatcttctgcatcactccagggt 69388

                                                        
Query: 283   ccttcagatgatcctgagcagccctagggttctcctggaaatc 325
              ||| ||||| ||||||| |||||||||||||||||| |||||
Sbjct: 69387 tcttaagatgctcctgagaagccctagggttctcctgcaaatc 69345
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>gb|BT016790.1| Zea mays clone Contig623 mRNA sequence
          Length = 2016

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 76/89 (85%)
 Strand = Plus / Minus

                                                                        
Query: 279  gggtccttcagatgatcctgagcagccctagggttctcctggaaatccatcaacacctgt 338
            |||| |||||| || ||||| || || || ||||||||||||||||| || |  ||||||
Sbjct: 1768 gggttcttcaggtgctcctgggccgcacttgggttctcctggaaatctattagaacctgt 1709

                                         
Query: 339  cgcatgataggatcggtaaggatgttctg 367
            ||||||||||| |||||||| ||||||||
Sbjct: 1708 cgcatgatagggtcggtaagaatgttctg 1680
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>ref|XM_473336.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2241

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                        
Query: 252  agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 311
            ||||| |||||||||||   |||||| |||| ||| |||||  ||||||||||| | || 
Sbjct: 2228 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 2169

                                                     
Query: 312  ttctcctggaaatccatcaacacctgtcgcatgataggatc 352
            ||||||||||| ||  ||||||||||  |||||||||||||
Sbjct: 2168 ttctcctggaagtcggtcaacacctgctgcatgataggatc 2128
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>dbj|AK108550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E04, full
            insert sequence
          Length = 1963

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                        
Query: 252  agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 311
            ||||| |||||||||||   |||||| |||| ||| |||||  ||||||||||| | || 
Sbjct: 1793 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 1734

                                                     
Query: 312  ttctcctggaaatccatcaacacctgtcgcatgataggatc 352
            ||||||||||| ||  ||||||||||  |||||||||||||
Sbjct: 1733 ttctcctggaagtcggtcaacacctgctgcatgataggatc 1693
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>gb|AY107480.1| Zea mays PCO126634 mRNA sequence
          Length = 1070

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 96/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 251 gagcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctagg 310
           |||||| |||||||||||   |||||| |||| ||| || ||  |||| ||||||| |||
Sbjct: 853 gagcttctggatcttctgcatcactccggggttcttgaggtgcgcctgcgcagcccgagg 794

                                                                    
Query: 311 gttctcctggaaatccatcaacacctgtcgcatgataggatcggtaaggatgttctg 367
           ||||||||| | |||| |||| |||||  ||||||| ||||| || |||||||||||
Sbjct: 793 gttctcctgcagatccgtcaaaacctgctgcatgatcggatcagtcaggatgttctg 737
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>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
              complete sequence
          Length = 174570

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                          
Query: 252    agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 311
              ||||| |||||||||||   |||||| |||| ||| |||||  ||||||||||| | || 
Sbjct: 111038 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 110979

                                        
Query: 312    ttctcctggaaatccatcaacacctg 337
              ||||||||||| ||  ||||||||||
Sbjct: 110978 ttctcctggaagtcggtcaacacctg 110953
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                            
Query: 252      agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 311
                ||||| |||||||||||   |||||| |||| ||| |||||  ||||||||||| | || 
Sbjct: 26889978 agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 26889919

                                          
Query: 312      ttctcctggaaatccatcaacacctg 337
                ||||||||||| ||  ||||||||||
Sbjct: 26889918 ttctcctggaagtcggtcaacacctg 26889893
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>dbj|AK108496.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-G10, full
           insert sequence
          Length = 871

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 71/86 (82%)
 Strand = Plus / Minus

                                                                       
Query: 252 agcttttggatcttctgtgccactccagggtccttcagatgatcctgagcagccctaggg 311
           ||||| |||||||||||   |||||| |||| ||| |||||  ||||||||||| | || 
Sbjct: 94  agcttctggatcttctgcatcactccggggttcttgagatgcgcctgagcagccttcgga 35

                                     
Query: 312 ttctcctggaaatccatcaacacctg 337
           ||||||||||| ||  ||||||||||
Sbjct: 34  ttctcctggaagtcggtcaacacctg 9
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>ref|XM_569243.1| Cryptococcus neoformans var. neoformans JEC21 mitochondrial import
           receptor subunit tom40 (CNB04190) partial mRNA
          Length = 1461

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 312 ttctcctggaaatccatcaac 332
           |||||||||||||||||||||
Sbjct: 525 ttctcctggaaatccatcaac 545
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 312     ttctcctggaaatccatcaac 332
               |||||||||||||||||||||
Sbjct: 1224704 ttctcctggaaatccatcaac 1224724
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>gb|AC130658.36| Mus musculus chromosome 1, clone RP23-309D5, complete sequence
          Length = 184094

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 259    ggatcttctgtgccactcca 278
              ||||||||||||||||||||
Sbjct: 171854 ggatcttctgtgccactcca 171873
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>gb|BC045275.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone
           IMAGE:4684066), partial cds
          Length = 1811

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  atagaactgtaacataatag 66
           ||||||||||||||||||||
Sbjct: 842 atagaactgtaacataatag 823
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>gb|BC054975.1| Xenopus laevis hypothetical protein MGC64474, mRNA (cDNA clone
           MGC:64474 IMAGE:6881346), complete cds
          Length = 2110

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  atagaactgtaacataatag 66
           ||||||||||||||||||||
Sbjct: 867 atagaactgtaacataatag 848
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>gb|AC133462.18| Mus musculus chromosome 1, clone RP24-441D8, complete sequence
          Length = 140132

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 259   ggatcttctgtgccactcca 278
             ||||||||||||||||||||
Sbjct: 14676 ggatcttctgtgccactcca 14695
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>gb|AY550246.1| Paracoccidioides brasiliensis small G-protein GPA1 (gpa1) gene,
            complete cds
          Length = 3825

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 50   gaactgtaacataatagccgtaaa 73
            |||||||||||||| |||||||||
Sbjct: 1039 gaactgtaacataacagccgtaaa 1062


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,881,232
Number of Sequences: 3902068
Number of extensions: 2881232
Number of successful extensions: 57609
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57550
Number of HSP's gapped (non-prelim): 59
length of query: 367
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 345
effective length of database: 17,147,199,772
effective search space: 5915783921340
effective search space used: 5915783921340
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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