ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet76d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ILPR_BRALA (O02466) Insulin-like peptide receptor precursor (EC ... 29 2.6
2ACK2_BOVIN (O02742) Activated CDC42 kinase 2 (EC 2.7.10.2) (ACK-2) 29 3.4
3TRUA_BARHE (Q6G547) tRNA pseudouridine synthase A (EC 5.4.99.12)... 28 7.5
4ARP6_CAEEL (Q09443) Actin-like protein C08B11.6 28 7.5
5EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.... 28 7.5

>ILPR_BRALA (O02466) Insulin-like peptide receptor precursor (EC 2.7.10.1) (ILP|
           receptor) [Contains: Insulin-like peptide receptor alpha
           chain; Insulin-like peptide receptor beta chain]
          Length = 1363

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +2

Query: 38  LHKNICS--ENNCNLQQSGDEAPTE*R---TNHQSNVTMPPAGRQLPPTPS 175
           LH N+    EN     +   E P   R   +N   NVT+P   R +PPTP+
Sbjct: 701 LHNNVYHKRENETRAGRRRRELPVTARPFYSNQTVNVTLPSTNRTVPPTPT 751



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>ACK2_BOVIN (O02742) Activated CDC42 kinase 2 (EC 2.7.10.2) (ACK-2)|
          Length = 747

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = +2

Query: 50  ICSENNCNLQQSGDEAPTE*RTNH----QSNVTMPPAGRQ-LPPTPSW 178
           +CS N+  +       P++  TN+    +    +PPAG Q +PPTP W
Sbjct: 661 VCSINSTLVGAGVSAEPSQGETNYAFVPEPARLLPPAGGQPVPPTPEW 708



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>TRUA_BARHE (Q6G547) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 247

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 16  SISSALKTAQEHLLGEQLQLTTIGR 90
           +I SAL+ A  H  G+QL +TT GR
Sbjct: 26  TIQSALEQALFHFSGQQLTITTAGR 50



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>ARP6_CAEEL (Q09443) Actin-like protein C08B11.6|
          Length = 418

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 47  NICSENNCNLQQSGDEAPTE*RTNHQSNVTM 139
           N C E+ C + Q+ DE+  E R   Q N TM
Sbjct: 203 NECKEDLCFVSQNFDESMKEARNRFQENTTM 233



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>EPHB4_HUMAN (P54760) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)|
           (Tyrosine-protein kinase receptor HTK)
          Length = 987

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 267 MDWASPEEAELHRGDGFSLLVYAWKS*LASHDGVGGSCRPAGGIVTFD 124
           ++W++P E+      G   L YA +         GGSC P GG +TFD
Sbjct: 341 LEWSAPLES-----GGREDLTYALR---CRECRPGGSCAPCGGDLTFD 380


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,006,441
Number of Sequences: 219361
Number of extensions: 548435
Number of successful extensions: 1266
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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