>L_SYNV (P31332) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2116

 Score = 32.3 bits (72), Expect = 0.34
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 9   KQSMYSRYYDSHMHLPRPTLVGAYIHMLVYSHMIGTRSKIE 131
           K + ++ YYD H H P  TL     H  +YS  +  R KIE
Sbjct: 405 KLTFFTNYYDKHHHYPLSTLTHP-DHFNLYSQYLSERDKIE 444

>CYB_CEPNE (Q34179) Cytochrome b|
          Length = 380

 Score = 30.8 bits (68), Expect = 0.99
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 3   SCKQSMYSRYYDSHMHLPRPTLVGAYIHMLVY-----SHMIGTRSKIEKAEL-PTDQCEL 164
           S  Q+  +R+Y  H  LP   LV   +H+L+      S+ +G  S + K    P    ++
Sbjct: 165 SVNQATLNRFYSFHFLLPFVILVFVLVHLLLLHDKGSSNPLGNMSHVSKVSFHPYFTWKI 224

Query: 165 TWHVYRLLQLALYAL 209
            W V+ LL   LY L
Sbjct: 225 LW-VFVLLCFLLYVL 238

>SBCC_VIBCH (Q9KM67) Nuclease sbcCD subunit C|
          Length = 1013

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 RSKIEKAELPTDQCELTWHVYRLLQLAL 200
           +++ E+A+L  D+ E  WH  R  +LAL
Sbjct: 472 QTQAEQAKLTADKLEFAWHTQRAAELAL 499

>NCAP_TPMV (Q9WS40) Nucleoprotein (Protein N) (Nucleocapsid protein) (NP|
           protein)
          Length = 552

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 105 MIGTRSKIEKAELPTDQCELTWHVYRLLQLALY--ALPDS 218
           ++G RS +      T    L W + RLL LA+Y  +LPDS
Sbjct: 28  LVGVRSTVVVLVPSTKDHRLRWKLIRLLTLAVYNDSLPDS 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,124,303
Number of Sequences: 219361
Number of extensions: 544877
Number of successful extensions: 1119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)