>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -1

Query: 242 QILTVIH-LDSVENYRGHLWLLLAWCSTR 159
           ++L V H + SV+ YRG LW+L  +CST+
Sbjct: 441 KMLEVFHAIKSVKIYRGALWILGEYCSTK 469

>Y2658_LISIN (Q927X9) Hypothetical UPF0230 protein lin2658|
          Length = 283

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = +2

Query: 47  DNSSYIVNEVKKTVHSNTEKEN--LQNTNYCE*SGSFCTAEYYTTLRAAKDAPDSSQRYP 220
           D+++Y+ +EVK+ +  N    +  +   +Y E      TA++Y  ++ A++ P SSQ  P
Sbjct: 10  DSTTYLPDEVKEQLRINVVPLSVIIDGKSYRE-GEELSTADFYKKVKEAENFPTSSQPAP 68

>YR680_MIMIV (Q5UNT6) Hypothetical protein R680|
          Length = 111

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 15/55 (27%), Positives = 31/55 (56%)
 Frame = -1

Query: 242 QILTVIHLDSVENYRGHLWLLLAWCSTRRYKKIQIIRSSWYFVNSPSLCSNVPFS 78
           +I  +I  D+++N++ HL + L     + Y+    I++   FVN+  + + +PFS
Sbjct: 56  KIKKIITKDNLDNFK-HLCINLTKNQKKYYQTKYYIKNKTLFVNNKGIFTLIPFS 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,488,680
Number of Sequences: 219361
Number of extensions: 586487
Number of successful extensions: 1438
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)