ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet75g12 |
|---|---|
| Clone Library Name | barley_pub |
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 15/81 (18%) Frame = +3 Query: 45 PTTLNLGGSCDSCT--TCTIDHMSRTSTVPTKVFSAP*WLQACKYNS*PY---------- 188 PT + GG +S T T H +RTST PT + +YN+ Y Sbjct: 749 PTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPPSTSSKLR 808 Query: 189 ---KLSKPPLLTGQNDQPNQP 242 + PP+ T Q P P Sbjct: 809 PRWTFTSPPVTTAQATVPVPP 829
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.3 bits (64), Expect = 2.7 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 15/81 (18%) Frame = +3 Query: 45 PTTLNLGGSCDSCT--TCTIDHMSRTSTVPTKVFSAP*WLQACKYNS*PY---------- 188 PT + GG +S T T H +RTST PT + +YN+ Y Sbjct: 749 PTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRTRYNATTYLPPSTSSKLR 808 Query: 189 ---KLSKPPLLTGQNDQPNQP 242 + PP+ T Q P P Sbjct: 809 PRWTFTSPPVTTAQATVPVPP 829
>RCEM_ROSDE (P26279) Reaction center protein M chain (Photosynthetic reaction| center M subunit) Length = 330 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 7/43 (16%) Frame = -2 Query: 260 IIAATTWLIWLVILASQK-------WGFAQLVWSGIILTGLQP 153 +++ TWL+ +LA Q WGFA VW ++L +P Sbjct: 126 LVSVMTWLLRAYLLAEQHKMGKHIFWGFAAAVWLFLVLGLFRP 168
>MT_PSEAM (P55945) Metallothionein (MT)| Length = 60 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%) Frame = +3 Query: 36 CTRPTTLNLGGSCD----SCTTCT 95 C++ T N GGSC SCTTCT Sbjct: 6 CSKTGTCNCGGSCTCKNCSCTTCT 29
>YDIK_SHIFL (P0AFS8) UPF0118 inner membrane protein ydiK| Length = 370 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 260 IIAATTWLIWLVILASQKWGFAQLVWSGIILT 165 +I A WL W WG LVWSG++ T Sbjct: 262 LIPAIIWLYWT---GDTTWGTVLLVWSGVVGT 290
>YDIK_ECOLI (P0AFS7) UPF0118 inner membrane protein ydiK| Length = 370 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -2 Query: 260 IIAATTWLIWLVILASQKWGFAQLVWSGIILT 165 +I A WL W WG LVWSG++ T Sbjct: 262 LIPAIIWLYWT---GDTTWGTVLLVWSGVVGT 290
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 28.5 bits (62), Expect = 4.7 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 15/81 (18%) Frame = +3 Query: 45 PTTLNLGGSCDSCT--TCTIDHMSRTSTVPTKVFSAP*WLQACKYNS*PY---------- 188 PT + GG +S T T H +RTST PT + +YN+ Y Sbjct: 770 PTVTSTGGKANSTTGGKHTTGHGARTSTEPTTDYGGDSTTPRPRYNATTYLPPSTSSKLR 829 Query: 189 ---KLSKPPLLTGQNDQPNQP 242 + PP+ T Q P P Sbjct: 830 PRWTFTSPPVTTAQATVPVPP 850
>MTB_CHAAC (P52724) Metallothionein B (MT-B)| Length = 60 Score = 27.7 bits (60), Expect = 8.0 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = +3 Query: 36 CTRPTTLNLGGSCDSCTTCT 95 CT+ T N GGSC +CT C+ Sbjct: 6 CTKSGTCNCGGSC-TCTNCS 24 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,699,937 Number of Sequences: 219361 Number of extensions: 735187 Number of successful extensions: 2156 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2156 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
