ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ810709.1| Poa pratensis mRNA for Ankyrin protein kinase-li... 66 6e-08
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
3dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
4dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
5dbj|AK102287.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
6gb|AC097472.2| Homo sapiens BAC clone RP11-75M18 from 4, complet... 44 0.20
7emb|AL929378.13| Zebrafish DNA sequence from clone CH211-169B18,... 42 0.81
8gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosom... 40 3.2
9ref|NM_015172.2| Homo sapiens BAT2 domain containing 1 (BAT2D1),... 40 3.2
10gb|AC150557.1| Drosophila melanogaster clone BACR06K04, complete... 40 3.2
11gb|AC074223.4| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.2
12gb|AY605182.1| Homo sapiens protein Sa (PROS1) gene, exon 1 and ... 40 3.2
13gb|AC113224.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 3.2
14gb|BT011359.1| Drosophila melanogaster RE68639 full insert cDNA 40 3.2
15gb|AY302553.1| Human echovirus 3 strain Morrisey complete genome 40 3.2
16gb|BT011086.1| Drosophila melanogaster RH54107 full insert cDNA 40 3.2
17emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 ... 40 3.2
18emb|AL954202.1| Pan troglodytes chromosome 22 clone PTB-083P20 m... 40 3.2
19gb|AC125239.4| Homo sapiens BAC clone RP11-419C6 from 4, complet... 40 3.2
20gb|AY308744.1| Homo sapiens protein S (alpha) (PROS1) gene, part... 40 3.2
21emb|Z98750.1|HS454G6 Human DNA sequence from clone RP3-454G6 on ... 40 3.2
22emb|AL590041.9| Human DNA sequence from clone RP13-436D9 on chro... 40 3.2
23emb|AL512508.8| Human DNA sequence from clone RP11-364E8 on chro... 40 3.2
24gb|BT010000.1| Drosophila melanogaster RE30213 full insert cDNA 40 3.2
25emb|AL161723.12| Human DNA sequence from clone RP13-172P13 on ch... 40 3.2
26gb|AC117474.7| Homo sapiens 3 BAC RP11-778P17 (Roswell Park Canc... 40 3.2
27emb|AL162004.1|HSM802522 Homo sapiens mRNA; cDNA DKFZp434M1616 (... 40 3.2
28emb|AL133635.1|HSM801504 Homo sapiens mRNA; cDNA DKFZp434H2018 (... 40 3.2
29emb|AL954204.1| Pan troglodytes chromosome 22 clone PTB-051G08 m... 40 3.2
30emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 ... 40 3.2
31dbj|AB029019.2| Homo sapiens mRNA for KIAA1096 protein, partial cds 40 3.2
32gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosom... 40 3.2
33gb|AF383304.1| HIV-1 isolate P63 from Uganda envelope glycoprote... 40 3.2
34gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101... 40 3.2
35gb|AC099309.1| Drosophila melanogaster, chromosome 4, region 101... 40 3.2
36gb|AC010576.16| Drosophila melanogaster, chromosome 4, region 10... 40 3.2
37gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Canc... 40 3.2
38gb|AC055817.12| Mus musculus, clone RP23-154I7, complete sequence 40 3.2
39gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromoso... 40 3.2
40emb|X89533.1|EV3VP2GEN Echovirus 3 DNA for 5'UTR and VP2 capsid ... 40 3.2
41emb|AJ295202.1|HEC295202 Human echovirus 3 genomic RNA for parti... 40 3.2
42emb|AL096857.1|HS598F21A Novel human mRNA from chromosome 1, whi... 40 3.2
43emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-8... 40 3.2
44emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate reg... 40 3.2
45gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 o... 40 3.2
46emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 i... 40 3.2
47emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chr... 40 3.2
48emb|AL714010.11| Mouse DNA sequence from clone RP23-455F14 on ch... 40 3.2
49gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Can... 40 3.2
50gb|AC158981.2| Mus musculus BAC clone RP23-230C10 from chromosom... 40 3.2
51emb|AL806527.7| Mouse DNA sequence from clone RP23-44D10 on chro... 40 3.2 
>emb|AJ810709.1| Poa pratensis mRNA for Ankyrin protein kinase-like (apk gene)
          Length = 2703

 Score = 65.9 bits (33), Expect = 6e-08
 Identities = 61/69 (88%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                        
Query: 125  tgctgccgatcaacagcaaggaagaaaccttggttgcttcattgctaccccggagaagtg 184
            |||| |||||| ||||||||||||||||||||||| ||||| ||||||| ||||  || |
Sbjct: 2323 tgctcccgatcgacagcaaggaagaaaccttggtt-cttcagtgctaccacggatgagcg 2265

                     
Query: 185  taggccatt 193
            |||||||||
Sbjct: 2264 taggccatt 2256
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 97       aaattacaaaactgttacaacaatatac 124
                ||||||||||| ||||||||||||||||
Sbjct: 14816125 aaattacaaaattgttacaacaatatac 14816098
to top
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0707C02
          Length = 163609

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 97     aaattacaaaactgttacaacaatatac 124
              ||||||||||| ||||||||||||||||
Sbjct: 101514 aaattacaaaattgttacaacaatatac 101487
to top
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0014G10
          Length = 164147

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 97    aaattacaaaactgttacaacaatatac 124
             ||||||||||| ||||||||||||||||
Sbjct: 24464 aaattacaaaattgttacaacaatatac 24437
to top
>dbj|AK102287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033089J21, full
            insert sequence
          Length = 2371

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 97   aaattacaaaactgttacaacaatatac 124
            ||||||||||| ||||||||||||||||
Sbjct: 2301 aaattacaaaattgttacaacaatatac 2274
to top
>gb|AC097472.2| Homo sapiens BAC clone RP11-75M18 from 4, complete sequence
          Length = 146479

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 86   tgaatggaattaaattacaaaa 107
            ||||||||||||||||||||||
Sbjct: 9626 tgaatggaattaaattacaaaa 9647
to top
>emb|AL929378.13| Zebrafish DNA sequence from clone CH211-169B18, complete sequence
          Length = 169874

 Score = 42.1 bits (21), Expect = 0.81
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 105   aaactgttacaacaatatact 125
             |||||||||||||||||||||
Sbjct: 48878 aaactgttacaacaatatact 48898
to top
>gb|AC163036.2| Mus musculus BAC clone RP23-219G12 from chromosome 17, complete sequence
          Length = 217187

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      gattacagaaactaataaag 22
              ||||||||||||||||||||
Sbjct: 211508 gattacagaaactaataaag 211489
to top
>ref|NM_015172.2| Homo sapiens BAT2 domain containing 1 (BAT2D1), mRNA
          Length = 10383

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gattacagaaactaataaag 22
             ||||||||||||||||||||
Sbjct: 10347 gattacagaaactaataaag 10366
to top
>gb|AC150557.1| Drosophila melanogaster clone BACR06K04, complete sequence
          Length = 170918

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    aattaaattacaaaactgttacaa 116
             |||||||||| |||||||||||||
Sbjct: 22385 aattaaattataaaactgttacaa 22362
to top
>gb|AC074223.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-339H7, complete
             sequence
          Length = 95365

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    taataaagcaataatatttc 34
             ||||||||||||||||||||
Sbjct: 12894 taataaagcaataatatttc 12913
to top
>gb|AY605182.1| Homo sapiens protein Sa (PROS1) gene, exon 1 and partial cds
          Length = 6664

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 35   ttgacaatacatctttcaat 54
            ||||||||||||||||||||
Sbjct: 4478 ttgacaatacatctttcaat 4459
to top
>gb|AC113224.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-99C24, complete
              sequence
          Length = 198436

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     taataaagcaataatatttc 34
              ||||||||||||||||||||
Sbjct: 189688 taataaagcaataatatttc 189707
to top
>gb|BT011359.1| Drosophila melanogaster RE68639 full insert cDNA
          Length = 2909

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 93   aattaaattacaaaactgttacaa 116
            |||||||||| |||||||||||||
Sbjct: 2245 aattaaattataaaactgttacaa 2222
to top
>gb|AY302553.1| Human echovirus 3 strain Morrisey complete genome
          Length = 7428

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  actaataaagcaataatatttctt 36
           |||||||||||||| |||||||||
Sbjct: 646 actaataaagcaattatatttctt 669
to top
>gb|BT011086.1| Drosophila melanogaster RH54107 full insert cDNA
          Length = 1833

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 93   aattaaattacaaaactgttacaa 116
            |||||||||| |||||||||||||
Sbjct: 1169 aattaaattataaaactgttacaa 1146
to top
>emb|AL954205.1| Pan troglodytes chromosome 22 clone RP43-046M07 map q21.1,
          complete sequence
          Length = 174216

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 3  gattacagaaactaataaag 22
          ||||||||||||||||||||
Sbjct: 74 gattacagaaactaataaag 55
to top
>emb|AL954202.1| Pan troglodytes chromosome 22 clone PTB-083P20 map q21.1, complete
              sequence
          Length = 197872

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      gattacagaaactaataaag 22
              ||||||||||||||||||||
Sbjct: 172590 gattacagaaactaataaag 172571
to top
>gb|AC125239.4| Homo sapiens BAC clone RP11-419C6 from 4, complete sequence
          Length = 123028

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 4     attacagaaactaataaagc 23
             ||||||||||||||||||||
Sbjct: 46282 attacagaaactaataaagc 46301
to top
>gb|AY308744.1| Homo sapiens protein S (alpha) (PROS1) gene, partial cds
          Length = 93089

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 35  ttgacaatacatctttcaat 54
           ||||||||||||||||||||
Sbjct: 584 ttgacaatacatctttcaat 565
to top
>emb|Z98750.1|HS454G6 Human DNA sequence from clone RP3-454G6 on chromosome 1q24 Contains
            the 3' end of the gene for HBxAg transactivated protein 2
            (XTP2) and the MYOC gene for myocilin, trabecular
            meshwork inducible glucocorticoid response, complete
            sequence
          Length = 79376

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gattacagaaactaataaag 22
            ||||||||||||||||||||
Sbjct: 3935 gattacagaaactaataaag 3954
to top
>emb|AL590041.9| Human DNA sequence from clone RP13-436D9 on chromosome X Contains
           the TGIF2LX gene for TGFB-induced factor 2-like,
           X-linked, complete sequence
          Length = 145184

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 3   gattacagaaactaataaag 22
           ||||||||||||||||||||
Sbjct: 333 gattacagaaactaataaag 352
to top
>emb|AL512508.8| Human DNA sequence from clone RP11-364E8 on chromosome 10, complete
            sequence
          Length = 74524

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   tgctgagtgatgaatggaat 95
            ||||||||||||||||||||
Sbjct: 3905 tgctgagtgatgaatggaat 3924
to top
>gb|BT010000.1| Drosophila melanogaster RE30213 full insert cDNA
          Length = 2909

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 93   aattaaattacaaaactgttacaa 116
            |||||||||| |||||||||||||
Sbjct: 2245 aattaaattataaaactgttacaa 2222
to top
>emb|AL161723.12| Human DNA sequence from clone RP13-172P13 on chromosome X, complete
              sequence
          Length = 155725

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gattacagaaactaataaag 22
              ||||||||||||||||||||
Sbjct: 154058 gattacagaaactaataaag 154077
to top
>gb|AC117474.7| Homo sapiens 3 BAC RP11-778P17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144160

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 35    ttgacaatacatctttcaat 54
             ||||||||||||||||||||
Sbjct: 93217 ttgacaatacatctttcaat 93236
to top
>emb|AL162004.1|HSM802522 Homo sapiens mRNA; cDNA DKFZp434M1616 (from clone DKFZp434M1616)
          Length = 5630

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gattacagaaactaataaag 22
            ||||||||||||||||||||
Sbjct: 5529 gattacagaaactaataaag 5548
to top
>emb|AL133635.1|HSM801504 Homo sapiens mRNA; cDNA DKFZp434H2018 (from clone DKFZp434H2018)
          Length = 2974

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gattacagaaactaataaag 22
            ||||||||||||||||||||
Sbjct: 2909 gattacagaaactaataaag 2928
to top
>emb|AL954204.1| Pan troglodytes chromosome 22 clone PTB-051G08 map q21.1, complete
             sequence
          Length = 146898

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gattacagaaactaataaag 22
             ||||||||||||||||||||
Sbjct: 33138 gattacagaaactaataaag 33119
to top
>emb|AL954203.1| Pan troglodytes chromosome 22 clone RP43-019O24 map q21.1, complete
             sequence
          Length = 206110

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gattacagaaactaataaag 22
             ||||||||||||||||||||
Sbjct: 99658 gattacagaaactaataaag 99639
to top
>dbj|AB029019.2| Homo sapiens mRNA for KIAA1096 protein, partial cds
          Length = 7421

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    gattacagaaactaataaag 22
            ||||||||||||||||||||
Sbjct: 7390 gattacagaaactaataaag 7409
to top
>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence
          Length = 191648

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 106    aactgttacaacaatatact 125
              ||||||||||||||||||||
Sbjct: 123940 aactgttacaacaatatact 123921
to top
>gb|AF383304.1| HIV-1 isolate P63 from Uganda envelope glycoprotein (env) gene,
           partial cds
          Length = 275

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 14  ctaataaagcaataatattt 33
           ||||||||||||||||||||
Sbjct: 231 ctaataaagcaataatattt 250
to top
>gb|AC010668.7| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
              BACR44L03, complete sequence
          Length = 172190

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     aattaaattacaaaactgttacaa 116
              |||||||||| |||||||||||||
Sbjct: 119024 aattaaattataaaactgttacaa 119001
to top
>gb|AC099309.1| Drosophila melanogaster, chromosome 4, region 101C-101D, BAC clone
              BACR16H06, complete sequence
          Length = 157561

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 93     aattaaattacaaaactgttacaa 116
              |||||||||| |||||||||||||
Sbjct: 152144 aattaaattataaaactgttacaa 152167
to top
>gb|AC010576.16| Drosophila melanogaster, chromosome 4, region 101F-102F, BAC clone
             BACR30L15, complete sequence
          Length = 175192

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 93    aattaaattacaaaactgttacaa 116
             |||||||||| |||||||||||||
Sbjct: 53014 aattaaattataaaactgttacaa 52991
to top
>gb|AC079176.15| Homo sapiens X BAC RP11-325D5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186278

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     agcaataatatttcttgaca 40
              ||||||||||||||||||||
Sbjct: 124179 agcaataatatttcttgaca 124160



 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     agcaataatatttcttgaca 40
              ||||||||||||||||||||
Sbjct: 102621 agcaataatatttcttgaca 102602
to top
>gb|AC055817.12| Mus musculus, clone RP23-154I7, complete sequence
          Length = 203805

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ttaacagagagacactagtt 73
              ||||||||||||||||||||
Sbjct: 103948 ttaacagagagacactagtt 103929
to top
>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete
             sequence
          Length = 230767

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   aactgttacaacaatatact 125
             ||||||||||||||||||||
Sbjct: 76705 aactgttacaacaatatact 76686
to top
>emb|X89533.1|EV3VP2GEN Echovirus 3 DNA for 5'UTR and VP2 capsid protein gene
          Length = 779

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  actaataaagcaataatatttctt 36
           |||||||||||||| |||||||||
Sbjct: 529 actaataaagcaattatatttctt 552
to top
>emb|AJ295202.1|HEC295202 Human echovirus 3 genomic RNA for partial polyprotein gene, isolate
           VR-33, ATCC
          Length = 1141

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 13  actaataaagcaataatatttctt 36
           |||||||||||||| |||||||||
Sbjct: 606 actaataaagcaattatatttctt 629
to top
>emb|AL096857.1|HS598F21A Novel human mRNA from chromosome 1, which has similarities to BAT2
             genes
          Length = 10174

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     gattacagaaactaataaag 22
             ||||||||||||||||||||
Sbjct: 10138 gattacagaaactaataaag 10157
to top
>emb|AL359220.4|CNS05TEI Human chromosome 14 DNA sequence BAC R-855C23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 196698

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ttaacagagagacactagtt 73
              ||||||||||||||||||||
Sbjct: 168199 ttaacagagagacactagtt 168218
to top
>emb|AL121652.2|CNS01DS2 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 1057B06 of
              library RPCI-11 from chromosome 2 of Homo sapiens (Human)
          Length = 187182

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     aataaagcaataatatttct 35
              ||||||||||||||||||||
Sbjct: 122259 aataaagcaataatatttct 122240
to top
>gb|AE003843.5| Drosophila melanogaster chromosome 4, section 3 of 5 of the complete
              sequence
          Length = 328561

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 93     aattaaattacaaaactgttacaa 116
              |||||||||| |||||||||||||
Sbjct: 165353 aattaaattataaaactgttacaa 165330
to top
>emb|CR450837.12| Zebrafish DNA sequence from clone CH211-51L13 in linkage group 16,
             complete sequence
          Length = 166747

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    aatggaattaaattacaaaa 107
             ||||||||||||||||||||
Sbjct: 56999 aatggaattaaattacaaaa 57018
to top
>emb|CT010473.14| Mouse DNA sequence from clone RP23-238D5 on chromosome 17, complete
             sequence
          Length = 173998

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     gattacagaaactaataaag 22
             ||||||||||||||||||||
Sbjct: 61238 gattacagaaactaataaag 61219
to top
>emb|AL714010.11| Mouse DNA sequence from clone RP23-455F14 on chromosome X, complete
              sequence
          Length = 118604

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     ttaacagagagacactagtt 73
              ||||||||||||||||||||
Sbjct: 116247 ttaacagagagacactagtt 116266
to top
>gb|AC153422.5| Mus musculus 10 BAC RP23-427I15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 197906

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 3      gattacagaaactaataaag 22
              ||||||||||||||||||||
Sbjct: 160805 gattacagaaactaataaag 160824
to top
>gb|AC158981.2| Mus musculus BAC clone RP23-230C10 from chromosome 14, complete sequence
          Length = 213277

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ctaataaagcaataatattt 33
              ||||||||||||||||||||
Sbjct: 199723 ctaataaagcaataatattt 199704
to top
>emb|AL806527.7| Mouse DNA sequence from clone RP23-44D10 on chromosome 4, complete
              sequence
          Length = 176816

 Score = 40.1 bits (20), Expect = 3.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 44     catctttcaattaacagagagaca 67
              |||||||||||||||||| |||||
Sbjct: 131897 catctttcaattaacagaaagaca 131920


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,693,084
Number of Sequences: 3902068
Number of extensions: 2693084
Number of successful extensions: 51308
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51223
Number of HSP's gapped (non-prelim): 85
length of query: 247
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 225
effective length of database: 17,147,199,772
effective search space: 3858119948700
effective search space used: 3858119948700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top