ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaet75g04 |
|---|---|
| Clone Library Name | barley_pub |
>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 31.6 bits (70), Expect = 0.51 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 180 LKSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 338 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 30.8 bits (68), Expect = 0.86 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 180 LKSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 338 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/88 (21%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = -1 Query: 324 HRAAPGDGEAHL---VIADTPETSLTSCLGCSKLRRVDRYSRDPRPIERI*GRGDENKEV 154 H A+P D + L ++ TP ++ + + + R + R SR P P++ D+N Sbjct: 9 HTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSRSPSPLQSNASDCDDNNSS 68 Query: 153 MASIERSCLGRTCPIFLYGDVQTSEQFV 70 + + C P Q Q + Sbjct: 69 VGTSSDRCRSPLSPALSLSHQQAKRQLM 96
>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 180 LKSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 338 LKSVR+A L + S +P R+S V QG +P A +R G DEA Sbjct: 17 LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 100 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 100 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 100 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 1.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 100 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 293 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -1 Query: 318 AAPGDGEAHLVIADTPETSLTSCLGCSKL 232 A PGDG AH + ADT L + L KL Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 29.3 bits (64), Expect = 2.5 Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 5/103 (4%) Frame = +3 Query: 42 SNIGVLQQSKRTVLKSEHHR--TRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCY 215 SN+GV S + L + T +W+ PLP + + S+ Sbjct: 373 SNVGVNGASPQERLMAARRAVVTMQWNTHLGRRGRSFAPLPTGGMSIATSAASSSTSSAS 432 Query: 216 TDRPAAASSNPSRMSG---TFPVCRRSQGELPHLPAQRGGPDE 335 + SN + S + PV ++ E PH+P GGP + Sbjct: 433 SSSSMNDGSNAKKTSDAAVSLPVGQQPAAEQPHVPTAPGGPSQ 475
>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Mannosyltransferase- Length = 464 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 94 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 228 +TV + K PLD +H LF+ + S +PF R + P DP Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +1 Query: 109 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 NG G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335
>LNK_HUMAN (Q9UQQ2) Lymphocyte-specific adapter protein Lnk (Signal| transduction protein Lnk) (Lymphocyte adapter protein) Length = 575 Score = 28.9 bits (63), Expect = 3.3 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +3 Query: 180 LKSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELP--HLPAQRGGPDEAAD 344 L RS+ +L P S R S RRS GELP H A G P EAA+ Sbjct: 115 LPKARSSEELAPPRPPGPCSFQHFRRSLRHIFRRRSAGELPAAHTAAAPGTPGEAAE 171
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/58 (32%), Positives = 27/58 (46%) Frame = +1 Query: 97 TVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 T+ G G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 279 TIINEGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335
>VP6_BTV1S (Q03328) VP6 protein (Minor inner core protein VP6)| Length = 328 Score = 28.5 bits (62), Expect = 4.3 Identities = 12/19 (63%), Positives = 14/19 (73%) Frame = +3 Query: 279 RRSQGELPHLPAQRGGPDE 335 RR QG+ PH AQR GP+E Sbjct: 207 RRKQGKKPHGDAQREGPEE 225
>GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment)| Length = 1360 Score = 28.5 bits (62), Expect = 4.3 Identities = 14/30 (46%), Positives = 17/30 (56%) Frame = +3 Query: 237 SSNPSRMSGTFPVCRRSQGELPHLPAQRGG 326 +S S MS + V RRS P+LP QR G Sbjct: 591 NSTTSTMSSAYTVSRRSSVVSPYLPNQRAG 620
>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III| Length = 1150 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%) Frame = +3 Query: 39 ISNIGVLQQSKRTVLKSEHHRTRKWDRFDQDTTSRSTPL-------PLYSHLLCLK 185 ++N+G L S + K+EHH R +R ++ + L P SHLL ++ Sbjct: 474 LNNVGALYMSMKQYEKAEHHFKRAKERLEEQLNTDEGSLLLERRSAPEKSHLLTIR 529
>ALG1_PONPY (Q5R7A2) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) Length = 464 Score = 28.1 bits (61), Expect = 5.6 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 94 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRA 243 +TV + K PLD +H LF+ + +PF R + P DP R+ Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGGTHSPF---RARSEPEDPATERS 258
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 183 KSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELPH 305 KS + + AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.1 bits (61), Expect = 5.6 Identities = 12/41 (29%), Positives = 22/41 (53%) Frame = +3 Query: 183 KSVRSAADLCYTDRPAAASSNPSRMSGTFPVCRRSQGELPH 305 KS + + AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>RPOC_PEDAC (P77917) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) (Fragment) Length = 1055 Score = 28.1 bits (61), Expect = 5.6 Identities = 18/55 (32%), Positives = 27/55 (49%) Frame = +1 Query: 106 ENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 + +G +TR + R + I S ++P D + AIP+ PP LR GRF Sbjct: 196 KEASGQKRTRAVRRLDIIEAFIKSGNHP-DWMVMDAIPVMPPDLRPMVQLDGGRF 249
>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5| activator-binding protein C48) Length = 1822 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = -1 Query: 330 QGHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRVDRYSRDPRP 196 +G R G+ H ++ ++PE S + L ++ SRDP+P Sbjct: 1339 KGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKP 1383
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 27.3 bits (59), Expect = 9.5 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +1 Query: 88 LNITVQENGT------GSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQ 249 L T QE G G K R + R + I+S +NP + IP+ PP+LR Sbjct: 268 LQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV-LDVIPVIPPELRPMV 326 Query: 250 AGCQGRF 270 GRF Sbjct: 327 QLDAGRF 333
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 27.3 bits (59), Expect = 9.5 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Frame = +1 Query: 88 LNITVQENGT------GSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQ 249 L T QE G G K R + R + I+S +NP + IP+ PP+LR Sbjct: 268 LQKTAQELGVQIVECRGQRKVRAIKRLRVVNSFITSKANPACMV-LDVIPVIPPELRPMV 326 Query: 250 AGCQGRF 270 GRF Sbjct: 327 QLDAGRF 333
>COAT_CMVC (P21368) Coat protein (Capsid protein) (CP)| Length = 218 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = -1 Query: 348 HHRQPRQGHRAAPGDGEAHLVIADTPETSLTSCLGCSK 235 H R+PR+G R+AP +A+ + + L L + Sbjct: 13 HRRRPRRGSRSAPSSADANFRVLSQQLSRLNKTLAAGR 50
>MALF_VIBVY (Q7MFC2) Maltose transport system permease protein malF| Length = 523 Score = 27.3 bits (59), Expect = 9.5 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = -1 Query: 327 GHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRVDRYSRDPRPIERI*GRGDENKEVMA 148 GHR DG+ V+ TPE L S + L VD S PI+ I N+ ++ Sbjct: 140 GHRIVIKDGD---VLLSTPEFVLGSAISDLDLSPVDTVSGTAEPIKTI----VSNRTALS 192 Query: 147 SIE 139 SI+ Sbjct: 193 SID 195
>MALF_VIBVU (Q8D3U8) Maltose transport system permease protein malF| Length = 523 Score = 27.3 bits (59), Expect = 9.5 Identities = 21/63 (33%), Positives = 29/63 (46%) Frame = -1 Query: 327 GHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRVDRYSRDPRPIERI*GRGDENKEVMA 148 GHR DG+ V+ TPE L S + L VD S PI+ I N+ ++ Sbjct: 140 GHRIVIKDGD---VLLSTPEFVLGSAISDLDLSPVDTVSGTAEPIKTI----VSNRTALS 192 Query: 147 SIE 139 SI+ Sbjct: 193 SID 195
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 27.3 bits (59), Expect = 9.5 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +1 Query: 100 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 270 V +G G K R L R + + S ++P + IP+ PP+LR GRF Sbjct: 280 VIRDGKGQKKLRALKRLKVVAAFLRSGNDPAGMV-LDCIPVIPPELRPMVQLDGGRF 335
>ADEC_DEIRA (Q9RYP0) Adenine deaminase (EC 3.5.4.2) (Adenase) (Adenine aminase)| Length = 536 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 321 RAAPGDGEAHLVIAD 277 RAAPG G+A LV+AD Sbjct: 415 RAAPGSGDARLVVAD 429
>SMUF1_DROME (Q9V853) E3 ubiquitin-protein ligase Smurf1 (EC 6.3.2.-) (Smad| ubiquitination regulatory factor 1 homolog) (DSmurf) (Lethal with a checkpoint kinase protein) Length = 1061 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 5/44 (11%) Frame = -3 Query: 346 PSAASSGPPRCAGRWGSSPCDRRHTGN-----VPDILLGLLEAA 230 PSAA++ PP+ ++P T N VPD+ GLLE A Sbjct: 628 PSAAAAVPPQATPASNATPTTLTTTTNPPHRIVPDLPQGLLEGA 671
>DDL_THETN (Q8R778) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 389 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -2 Query: 230 GGSIGIAEIRGRSNGFEAEEMXXXXXXXXXXXRVLVEPVPFSCTVM 93 G SIGI++ + R F+A E+ + +P+ +C+VM Sbjct: 196 GSSIGISKAKNRDELFDAIEIAIYYDRKIIVEEAVKDPMEVNCSVM 241
>DAPA_XANCP (Q8P9V6) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 302 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 211 AIPIDPPQLRATQAGCQGRFRCVGDH 288 A+ + PP +R TQAG F+ V D+ Sbjct: 101 ALVVTPPYVRPTQAGLLAHFQAVADN 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,579,399 Number of Sequences: 219361 Number of extensions: 1070593 Number of successful extensions: 3305 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3212 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3304 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
