ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75g01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-bi... 31 0.91
2Y4ZB_RHISN (P55729) Putative transposase y4zB 28 7.7
3YQ91_CAEEL (Q10030) Hypothetical protein C27D6.1 28 7.7

>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PABP 2)
          Length = 629

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 19/33 (57%), Positives = 23/33 (69%)
 Frame = -1

Query: 302 LKAKVAEAMEVLRSAQQHTNQSPEQQLASLSLN 204
           LKAKVAEAM+VLRS          +QLASL+L+
Sbjct: 600 LKAKVAEAMDVLRSV---AAGGATEQLASLNLS 629



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>Y4ZB_RHISN (P55729) Putative transposase y4zB|
          Length = 356

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 197 GRHSTKAKPAAARGTGWCAAERCGEP 274
           G  +T+   A   G   C  ERCGEP
Sbjct: 5   GTPTTRRSAAGTAGADLCPVERCGEP 30



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>YQ91_CAEEL (Q10030) Hypothetical protein C27D6.1|
          Length = 782

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 18/59 (30%), Positives = 31/59 (52%)
 Frame = +3

Query: 6   GDNPEDTLNKITNPCK*NKPIHGKPKRLVQLLAKAKSQINQVIFSLDKFDMVQKLSLFS 182
           GDN   T  KI    +     +GK + L+ +  K    IN V+F ++K   ++K+++FS
Sbjct: 73  GDNEFKTSFKIFTIFEPTSTPNGKIQSLITISYK----INNVLFKMEKEIFIEKVNIFS 127


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,118,244
Number of Sequences: 219361
Number of extensions: 651826
Number of successful extensions: 1704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 80,573,946
effective HSP length: 76
effective length of database: 63,902,510
effective search space used: 1533660240
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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