>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence
          Length = 198279

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 20     ttgaaattatgtgaaatacata 41
              ||||||||||||||||||||||
Sbjct: 190806 ttgaaattatgtgaaatacata 190827

>gb|AC142345.1| Pan troglodytes BAC clone RP43-1K4 from Y, complete sequence
          Length = 213921

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 1     gcataaagcaattaaactttt 21
             |||||||||||||||||||||
Sbjct: 66191 gcataaagcaattaaactttt 66211

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 255     gtgcaggaacacgtccagcagcagc 279
               ||||||||||||| |||||||||||
Sbjct: 1362532 gtgcaggaacacgcccagcagcagc 1362556

>emb|AL049650.8|HSJ734P14 Human DNA sequence from clone RP4-734P14 on chromosome 20 Contains the
             3' end of the ZNF343 gene for zinc finger protein 343, the
             SNRPB gene for small nuclear ribonucleoprotein
             polypeptides B and B1 (B'), the 3' end of the TGM6 gene
             for transglutaminase 6 and a CpG island, complete sequence
          Length = 90220

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    aatacatacgtctaaatatcc 54
             |||||||||||||||||||||
Sbjct: 85612 aatacatacgtctaaatatcc 85592

>dbj|BS000600.1| Pan troglodytes chromosome Y clone:PTB-253H05, complete sequences
          Length = 100704

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     gcataaagcaattaaactttt 21
             |||||||||||||||||||||
Sbjct: 30551 gcataaagcaattaaactttt 30531

>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 1        gcataaagcaattaaactttt 21
                |||||||||||||||||||||
Sbjct: 15322215 gcataaagcaattaaactttt 15322235

>gb|AC146513.4| Pan troglodytes BAC clone CH251-223P3 from chromosome y, complete
             sequence
          Length = 162679

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1     gcataaagcaattaaactttt 21
             |||||||||||||||||||||
Sbjct: 17846 gcataaagcaattaaactttt 17826

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 10       aattaaacttttgaaattatg 30
                |||||||||||||||||||||
Sbjct: 29880346 aattaaacttttgaaattatg 29880366

>dbj|AP003614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0481E08
          Length = 171965

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 10    aattaaacttttgaaattatg 30
             |||||||||||||||||||||
Sbjct: 75859 aattaaacttttgaaattatg 75879

>ref|NM_019128.3| Rattus norvegicus internexin, alpha (Inexa), mRNA
          Length = 4535

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  cacgctgcaggcgtcttcgc 202
            ||||||||||||||||||||
Sbjct: 2012 cacgctgcaggcgtcttcgc 2031

>ref|XM_610746.2| PREDICTED: Bos taurus similar to internexin neuronal intermediate
           filament protein, alpha, transcript variant 1
           (LOC532236), mRNA
          Length = 2000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 cacgctgcaggcgtcttcgc 202
           ||||||||||||||||||||
Sbjct: 757 cacgctgcaggcgtcttcgc 776

>ref|XM_875792.1| PREDICTED: Bos taurus similar to internexin neuronal intermediate
           filament protein, alpha, transcript variant 3
           (LOC532236), mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 cacgctgcaggcgtcttcgc 202
           ||||||||||||||||||||
Sbjct: 632 cacgctgcaggcgtcttcgc 651

>gb|AC099315.3| Papio anubis clone RP41-403I2, complete sequence
          Length = 167836

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   gctggcacatatcagctgcc 220
             ||||||||||||||||||||
Sbjct: 69861 gctggcacatatcagctgcc 69880

>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 245907

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 183    cacgctgcaggcgtcttcgc 202
              ||||||||||||||||||||
Sbjct: 231160 cacgctgcaggcgtcttcgc 231179

>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence
          Length = 170074

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 229    gaggcgtccagtccagtgcacccg 252
              ||||||||||| ||||||||||||
Sbjct: 155756 gaggcgtccaggccagtgcacccg 155779

>gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complete sequence
          Length = 195917

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   gctggcacatatcagctgcc 220
             ||||||||||||||||||||
Sbjct: 31481 gctggcacatatcagctgcc 31500

>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12,
             complete sequence
          Length = 138715

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     caattaaacttttgaaatta 28
             ||||||||||||||||||||
Sbjct: 81876 caattaaacttttgaaatta 81895

>gb|DQ271310.1| Mustela vison clone III6N23 microsatellite sequence
          Length = 650

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 5   aaagcaattaaacttttgaaatta 28
           ||||||||||||||||| ||||||
Sbjct: 273 aaagcaattaaactttttaaatta 250

>dbj|AK055792.1| Homo sapiens cDNA FLJ31230 fis, clone KIDNE2004520
          Length = 2006

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 229 gaggcgtccagtccagtgcacccg 252
           ||||||||||| ||||||||||||
Sbjct: 476 gaggcgtccaggccagtgcacccg 453

>gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, complete sequence
          Length = 193989

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 229 gaggcgtccagtccagtgcacccg 252
           ||||||||||| ||||||||||||
Sbjct: 691 gaggcgtccaggccagtgcacccg 714

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 9       caattaaacttttgaaatta 28
               ||||||||||||||||||||
Sbjct: 9483758 caattaaacttttgaaatta 9483777

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 9        caattaaacttttgaaatta 28
                ||||||||||||||||||||
Sbjct: 40071924 caattaaacttttgaaatta 40071905

>gb|AC006448.14|AC006448 Homo sapiens chromosome 17, clone RP11-423M11, complete sequence
          Length = 127587

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aattaaacttttgaaattat 29
             ||||||||||||||||||||
Sbjct: 59140 aattaaacttttgaaattat 59121

>gb|AC016993.4|AC016993 Homo sapiens clone RP11-18J9, complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 28    atgtgaaatacatacgtcta 47
             ||||||||||||||||||||
Sbjct: 65559 atgtgaaatacatacgtcta 65540

>gb|AC007432.9|AC007432 Homo sapiens chromosome 17, clone RP11-166M16, complete sequence
          Length = 158045

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    aattaaacttttgaaattat 29
             ||||||||||||||||||||
Sbjct: 24930 aattaaacttttgaaattat 24949

>gb|AC023512.28|AC023512 Homo sapiens 12 BAC RP11-1018J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186044

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     ttaaacttttgaaattatgt 31
              ||||||||||||||||||||
Sbjct: 185228 ttaaacttttgaaattatgt 185209

>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0678F11
          Length = 154292

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     caattaaacttttgaaatta 28
             ||||||||||||||||||||
Sbjct: 15008 caattaaacttttgaaatta 14989

>gb|AC024095.13|AC024095 Homo sapiens 12 BAC RP11-239A17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 122032

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttaaacttttgaaattatgt 31
             ||||||||||||||||||||
Sbjct: 92887 ttaaacttttgaaattatgt 92906

>dbj|BS000147.1| Pan troglodytes chromosome 22 clone:PTB-072G02, map 22, complete
             sequences
          Length = 179346

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    aattaaacttttgaaattatgtgaaata 37
             |||||||||||| ||||| |||||||||
Sbjct: 50061 aattaaacttttaaaattgtgtgaaata 50034

>dbj|BS000072.1| Pan troglodytes chromosome 22 clone:RP43-156P08, map 22, complete
             sequences
          Length = 155118

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    aattaaacttttgaaattatgtgaaata 37
             |||||||||||| ||||| |||||||||
Sbjct: 34104 aattaaacttttaaaattgtgtgaaata 34077

>dbj|BS000071.1| Pan troglodytes chromosome 22 clone:RP43-104O21, map 22, complete
              sequences
          Length = 153441

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 10     aattaaacttttgaaattatgtgaaata 37
              |||||||||||| ||||| |||||||||
Sbjct: 116285 aattaaacttttaaaattgtgtgaaata 116258

>dbj|BS000025.1| Pan troglodytes chromosome 22 clone:PTB-017K18, map 22, complete
              sequences
          Length = 144566

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     ggggacattcatgaagcact 75
              ||||||||||||||||||||
Sbjct: 108305 ggggacattcatgaagcact 108286

>gb|AF241725.1|AF241725 Homo sapiens 21 map 21q21 clone B780G18, complete sequence
          Length = 172663

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    aattaaacttttgaaattatgtgaaata 37
             |||||||||||| ||||| |||||||||
Sbjct: 45752 aattaaacttttaaaattgtgtgaaata 45725

>emb|AL163227.2|HS21C027 Homo sapiens chromosome 21 segment HS21C027
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 10     aattaaacttttgaaattatgtgaaata 37
              |||||||||||| ||||| |||||||||
Sbjct: 113654 aattaaacttttaaaattgtgtgaaata 113627

>emb|AL713992.1|CEVY10G11R Caenorhabditis elegans Plasmid VY10G11R, complete sequence
          Length = 21062

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 9     caattaaacttttgaaatta 28
             ||||||||||||||||||||
Sbjct: 15151 caattaaacttttgaaatta 15132



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 9     caattaaacttttgaaatta 28
             ||||||||||||||||||||
Sbjct: 13814 caattaaacttttgaaatta 13833

>gb|AF082285.1|AF082285 Homo sapiens neurotensin/neuromedin N gene promoter region,
           complete sequence; and exon 1, partial sequence
          Length = 2500

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 28  atgtgaaatacatacgtcta 47
           ||||||||||||||||||||
Sbjct: 922 atgtgaaatacatacgtcta 903

>gb|AC004068.1|AC004068 Homo sapiens chromosome 4 clone B380B14 map 4q25, complete sequence
          Length = 110401

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 10    aattaaacttttgaaattatgtgaaata 37
             |||||||||||| ||||| |||||||||
Sbjct: 68582 aattaaacttttaaaattgtgtgaaata 68555

>gb|M73049.1|RATINTLAA Rat alpha-internexin gene, complete cds
          Length = 4593

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  cacgctgcaggcgtcttcgc 202
            ||||||||||||||||||||
Sbjct: 2012 cacgctgcaggcgtcttcgc 2031


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,175,332
Number of Sequences: 3902068
Number of extensions: 2175332
Number of successful extensions: 46158
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46038
Number of HSP's gapped (non-prelim): 120
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)