ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
2dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic D... 137 2e-29
3dbj|AK064734.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 2e-29
4ref|XM_482929.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.015
5ref|XM_507269.1| PREDICTED Oryza sativa (japonica cultivar-group... 48 0.015
6dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
7dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
8dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.015
9dbj|AK073975.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
10dbj|AK060706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
11gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, co... 44 0.24
12dbj|AK157575.1| Mus musculus activated spleen cDNA, RIKEN full-l... 44 0.24
13dbj|AK040250.1| Mus musculus 0 day neonate thymus cDNA, RIKEN fu... 44 0.24
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.24
15gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, c... 42 0.95
16ref|XM_955684.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.95
17ref|XM_326752.1| Neurospora crassa OR74A hypothetical protein (N... 42 0.95
18ref|NM_021495.1| Mus musculus poliovirus receptor-related 3 (Pvr... 42 0.95
19ref|XM_807967.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 0.95
20gb|BC090071.1| Rattus norvegicus cDNA clone IMAGE:7111992, **** ... 42 0.95
21gb|BC053477.1| Mus musculus cDNA clone IMAGE:6433725 42 0.95
22emb|BX294015.1|NCB10N12 Neurospora crassa DNA linkage group V BA... 42 0.95
23dbj|AK011949.1| Mus musculus 10 days embryo whole body cDNA, RIK... 42 0.95
24gb|AC167670.1| Mus musculus BAC clone RP24-119K18 from chromosom... 42 0.95
25gb|AF195833.1|AF195833 Mus musculus cell adhesion molecule necti... 42 0.95
26gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 40 3.7
27ref|XM_470264.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
28ref|XM_470263.1| Oryza sativa (japonica cultivar-group), predic... 40 3.7
29ref|XM_415764.1| PREDICTED: Gallus gallus similar to hypothetica... 40 3.7
30gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 40 3.7
31ref|NM_001001876.1| Gallus gallus basement membrane-specific hep... 40 3.7
32gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.7
33emb|AL583882.6| Human DNA sequence from clone RP5-1098C18 on chr... 40 3.7
34gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.7
35emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specifi... 40 3.7
36emb|CR857401.1| Pongo pygmaeus mRNA; cDNA DKFZp459F2222 (from cl... 40 3.7
37gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Ca... 40 3.7
38dbj|AK148805.1| Mus musculus 2 days neonate sympathetic ganglion... 40 3.7
39dbj|AK161353.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.7
40emb|BX950667.2| Gallus gallus finished cDNA, clone ChEST386h5 40 3.7
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
42ref|XM_230377.3| PREDICTED: Rattus norvegicus Tnf receptor-assoc... 40 3.7
43gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, co... 40 3.7
44dbj|AK063345.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
45emb|Z73582.1|SCYPL226W S.cerevisiae chromosome XVI reading frame... 40 3.7
46gb|DQ332051.1| Synthetic construct Saccharomyces cerevisiae clon... 40 3.7
47emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on ch... 40 3.7 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  137 bits (69), Expect = 2e-29
 Identities = 129/149 (86%)
 Strand = Plus / Plus

                                                                            
Query: 138      gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatggaagcag 197
                |||||||| ||||||||||||||||| ||||||| |  |||||     || |||||||||
Sbjct: 17416567 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 17416626

                                                                            
Query: 198      tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257
                ||||| || |||||||||||||  | |||||||||||| ||||||||||||||| | |||
Sbjct: 17416627 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 17416686

                                             
Query: 258      ccatcgcagtacgcgcggccgcggtcgcg 286
                || ||||||||||||||||||||||||||
Sbjct: 17416687 ccctcgcagtacgcgcggccgcggtcgcg 17416715
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>dbj|AP006849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054F02
          Length = 180651

 Score =  137 bits (69), Expect = 2e-29
 Identities = 129/149 (86%)
 Strand = Plus / Plus

                                                                          
Query: 138    gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatggaagcag 197
              |||||||| ||||||||||||||||| ||||||| |  |||||     || |||||||||
Sbjct: 140480 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 140539

                                                                          
Query: 198    tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257
              ||||| || |||||||||||||  | |||||||||||| ||||||||||||||| | |||
Sbjct: 140540 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 140599

                                           
Query: 258    ccatcgcagtacgcgcggccgcggtcgcg 286
              || ||||||||||||||||||||||||||
Sbjct: 140600 ccctcgcagtacgcgcggccgcggtcgcg 140628
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>dbj|AK064734.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-120-C05, full
           insert sequence
          Length = 1162

 Score =  137 bits (69), Expect = 2e-29
 Identities = 129/149 (86%)
 Strand = Plus / Minus

                                                                       
Query: 138 gcaatggcatcgtcctgcctgacggcgtcgtcgcaggagaagttgccgagatggaagcag 197
           |||||||| ||||||||||||||||| ||||||| |  |||||     || |||||||||
Sbjct: 992 gcaatggcgtcgtcctgcctgacggcctcgtcgccgttgaagtccatcaggtggaagcag 933

                                                                       
Query: 198 tggccctgcccggccacctcgagcagctccacctccccggcccacccgctcgccctgagc 257
           ||||| || |||||||||||||  | |||||||||||| ||||||||||||||| | |||
Sbjct: 932 tggccatggccggccacctcgacgacctccacctcccccgcccacccgctcgccttaagc 873

                                        
Query: 258 ccatcgcagtacgcgcggccgcggtcgcg 286
           || ||||||||||||||||||||||||||
Sbjct: 872 ccctcgcagtacgcgcggccgcggtcgcg 844
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>ref|XM_482929.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1377

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
           ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 946 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 899
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>ref|XM_507269.1| PREDICTED Oryza sativa (japonica cultivar-group), P0451G12.24 mRNA
          Length = 1426

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
           ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 948 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 901
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 239      ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
                ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 23412445 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 23412398
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>dbj|AP004399.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0451G12
          Length = 142182

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 239   ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
             ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 94282 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 94235
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>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
            clone:OJ1111_E05
          Length = 126978

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 239  ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
            ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 3860 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 3813
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>dbj|AK073975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033072F03, full
           insert sequence
          Length = 1377

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
           ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 946 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 899
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>dbj|AK060706.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H02, full
           insert sequence
          Length = 1426

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 239 ccacccgctcgccctgagcccatcgcagtacgcgcggccgcggtcgcg 286
           ||||||||||| | ||||||  ||| |||| |||||||||||||||||
Sbjct: 948 ccacccgctcgacgtgagccggtcgtagtaggcgcggccgcggtcgcg 901
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>gb|AC109201.12| Mus musculus chromosome 15, clone RP23-18P10, complete sequence
          Length = 213493

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 94    tgcccgtgtccacgagacatgg 115
             ||||||||||||||||||||||
Sbjct: 29294 tgcccgtgtccacgagacatgg 29315
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>dbj|AK157575.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830224H04 product:unclassifiable, full
           insert sequence
          Length = 3720

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 94  tgcccgtgtccacgagacatgg 115
           ||||||||||||||||||||||
Sbjct: 382 tgcccgtgtccacgagacatgg 361
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>dbj|AK040250.1| Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A430080J11 product:unclassifiable, full
           insert sequence
          Length = 3495

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 94  tgcccgtgtccacgagacatgg 115
           ||||||||||||||||||||||
Sbjct: 154 tgcccgtgtccacgagacatgg 133
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 209     ggccacctcgagcagctccacc 230
               ||||||||||||||||||||||
Sbjct: 1537774 ggccacctcgagcagctccacc 1537795
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>gb|AC113113.18| Mus musculus chromosome 16, clone RP23-334P10, complete sequence
          Length = 216380

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 232    ccccggcccacccgctcgccc 252
              |||||||||||||||||||||
Sbjct: 208201 ccccggcccacccgctcgccc 208221
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>ref|XM_955684.1| Neurospora crassa OR74A hypothetical protein (NCU01260.1) partial
            mRNA
          Length = 6924

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 208  cggccacctcgagcagctccacctc 232
            |||||||| ||||||||||||||||
Sbjct: 2534 cggccaccgcgagcagctccacctc 2510
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>ref|XM_326752.1| Neurospora crassa OR74A hypothetical protein (NCU01260.1) partial
            mRNA
          Length = 6924

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 208  cggccacctcgagcagctccacctc 232
            |||||||| ||||||||||||||||
Sbjct: 2534 cggccaccgcgagcagctccacctc 2510
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>ref|NM_021495.1| Mus musculus poliovirus receptor-related 3 (Pvrl3), transcript
           variant alpha, mRNA
          Length = 2166

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 ccccggcccacccgctcgccc 252
           |||||||||||||||||||||
Sbjct: 180 ccccggcccacccgctcgccc 160
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>ref|XM_807967.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508209.70) partial mRNA
          Length = 1098

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 214 cctcgagcagctccacctccc 234
           |||||||||||||||||||||
Sbjct: 736 cctcgagcagctccacctccc 716
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>gb|BC090071.1| Rattus norvegicus cDNA clone IMAGE:7111992, **** WARNING: chimeric
            clone ****
          Length = 2837

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 232  ccccggcccacccgctcgccc 252
            |||||||||||||||||||||
Sbjct: 1416 ccccggcccacccgctcgccc 1396
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>gb|BC053477.1| Mus musculus cDNA clone IMAGE:6433725
          Length = 2075

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 232  ccccggcccacccgctcgccc 252
            |||||||||||||||||||||
Sbjct: 2008 ccccggcccacccgctcgccc 2028
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>emb|BX294015.1|NCB10N12 Neurospora crassa DNA linkage group V BAC contig B10N12
          Length = 70199

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 208   cggccacctcgagcagctccacctc 232
             |||||||| ||||||||||||||||
Sbjct: 34842 cggccaccgcgagcagctccacctc 34866
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>dbj|AK011949.1| Mus musculus 10 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2610301B19 product:poliovirus
           receptor-related 3, full insert sequence
          Length = 2151

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 ccccggcccacccgctcgccc 252
           |||||||||||||||||||||
Sbjct: 183 ccccggcccacccgctcgccc 163
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>gb|AC167670.1| Mus musculus BAC clone RP24-119K18 from chromosome 16, complete
             sequence
          Length = 200044

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 232   ccccggcccacccgctcgccc 252
             |||||||||||||||||||||
Sbjct: 23588 ccccggcccacccgctcgccc 23608
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>gb|AF195833.1|AF195833 Mus musculus cell adhesion molecule nectin-3 alpha mRNA, complete
           cds
          Length = 2166

 Score = 42.1 bits (21), Expect = 0.95
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 232 ccccggcccacccgctcgccc 252
           |||||||||||||||||||||
Sbjct: 180 ccccggcccacccgctcgccc 160
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 202     cctgcccggccacctcgagcagct 225
               |||||| |||||||||||||||||
Sbjct: 1977709 cctgccgggccacctcgagcagct 1977686
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>ref|XM_470264.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 cctccccggcccacccgctc 248
           ||||||||||||||||||||
Sbjct: 635 cctccccggcccacccgctc 654
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>ref|XM_470263.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1473

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 cctccccggcccacccgctc 248
           ||||||||||||||||||||
Sbjct: 209 cctccccggcccacccgctc 228
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>ref|XM_415764.1| PREDICTED: Gallus gallus similar to hypothetical protein, MNCb-4760
           (LOC417516), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 tcgagcagctccacctcccc 235
           ||||||||||||||||||||
Sbjct: 490 tcgagcagctccacctcccc 509
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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   cctccccggcccacccgctc 248
             ||||||||||||||||||||
Sbjct: 25070 cctccccggcccacccgctc 25089
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>ref|NM_001001876.1| Gallus gallus basement membrane-specific heparan sulfate proteoglycan
             core protein (HSPG), mRNA
          Length = 12255

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   tggccctgcccggccacctc 217
             ||||||||||||||||||||
Sbjct: 11693 tggccctgcccggccacctc 11712
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 229      cctccccggcccacccgctc 248
                ||||||||||||||||||||
Sbjct: 29824391 cctccccggcccacccgctc 29824372



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 229     cctccccggcccacccgctc 248
               ||||||||||||||||||||
Sbjct: 3140577 cctccccggcccacccgctc 3140558



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     cctccccggcccacccgctc 248
               ||||||||||||||||||||
Sbjct: 3138721 cctccccggcccacccgctc 3138740
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>emb|AL583882.6| Human DNA sequence from clone RP5-1098C18 on chromosome 1p36.23-36.33
             Contains GSSs, STSs and a CpG island, complete sequence
          Length = 90582

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 221   cagctccacctccccggccc 240
             ||||||||||||||||||||
Sbjct: 81404 cagctccacctccccggccc 81423
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>gb|AC099401.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1134F05,
             complete sequence
          Length = 101799

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   cctccccggcccacccgctc 248
             ||||||||||||||||||||
Sbjct: 63590 cctccccggcccacccgctc 63571



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   cctccccggcccacccgctc 248
             ||||||||||||||||||||
Sbjct: 61734 cctccccggcccacccgctc 61753
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>emb|AJ584653.1| Gallus gallus mRNA for basement membrane-specific heparan sulfate
             proteoglycan core protein precursor (HSPG gene)
          Length = 12255

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   tggccctgcccggccacctc 217
             ||||||||||||||||||||
Sbjct: 11693 tggccctgcccggccacctc 11712
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>emb|CR857401.1| Pongo pygmaeus mRNA; cDNA DKFZp459F2222 (from clone
          DKFZp459F2222)
          Length = 2045

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 14 caatcctcttccccagatgc 33
          ||||||||||||||||||||
Sbjct: 40 caatcctcttccccagatgc 21
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>gb|AC084361.19| Homo sapiens 12 BAC RP11-364C11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172853

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    cagctccacctccccggccc 240
              ||||||||||||||||||||
Sbjct: 158039 cagctccacctccccggccc 158020
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>dbj|AK148805.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120448K24
            product:hypothetical Glutamic acid-rich region
            profile/Serine-rich region profile containing protein,
            full insert sequence
          Length = 1443

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  agatggaagcagtggccctg 205
            ||||||||||||||||||||
Sbjct: 1244 agatggaagcagtggccctg 1263
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>dbj|AK161353.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930441D08 product:protein tyrosine
           phosphatase, receptor type, E, full insert sequence
          Length = 1920

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 186 agatggaagcagtggccctg 205
           ||||||||||||||||||||
Sbjct: 210 agatggaagcagtggccctg 229
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>emb|BX950667.2| Gallus gallus finished cDNA, clone ChEST386h5
          Length = 865

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 216 tcgagcagctccacctcccc 235
           ||||||||||||||||||||
Sbjct: 650 tcgagcagctccacctcccc 669
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 229      cctccccggcccacccgctc 248
                ||||||||||||||||||||
Sbjct: 29915813 cctccccggcccacccgctc 29915794



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 229     cctccccggcccacccgctc 248
               ||||||||||||||||||||
Sbjct: 3140688 cctccccggcccacccgctc 3140669



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     cctccccggcccacccgctc 248
               ||||||||||||||||||||
Sbjct: 3138832 cctccccggcccacccgctc 3138851
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>ref|XM_230377.3| PREDICTED: Rattus norvegicus Tnf receptor-associated factor 6
            (predicted) (Traf6_predicted), mRNA
          Length = 1713

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  aagttgccgagatggaagca 196
            ||||||||||||||||||||
Sbjct: 1163 aagttgccgagatggaagca 1182
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>gb|AC104770.10| Homo sapiens chromosome 17, clone RP11-960B9, complete sequence
          Length = 188574

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   aatggcatcgtcctgcctga 159
             ||||||||||||||||||||
Sbjct: 95165 aatggcatcgtcctgcctga 95184
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>dbj|AK063345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-114-B07, full
           insert sequence
          Length = 1586

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 cctccccggcccacccgctc 248
           ||||||||||||||||||||
Sbjct: 46  cctccccggcccacccgctc 65
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>emb|Z73582.1|SCYPL226W S.cerevisiae chromosome XVI reading frame ORF YPL226w
          Length = 4838

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  ttttacagattcaggaacct 136
            ||||||||||||||||||||
Sbjct: 1700 ttttacagattcaggaacct 1681
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>gb|DQ332051.1| Synthetic construct Saccharomyces cerevisiae clone FLH148235.01X NEW1
            gene, complete sequence
          Length = 3591

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  ttttacagattcaggaacct 136
            ||||||||||||||||||||
Sbjct: 1101 ttttacagattcaggaacct 1082
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>emb|AL672004.12| Mouse DNA sequence from clone RP23-200C21 on chromosome 11, complete
            sequence
          Length = 101730

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 186  agatggaagcagtggccctg 205
            ||||||||||||||||||||
Sbjct: 7595 agatggaagcagtggccctg 7614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,229,909
Number of Sequences: 3902068
Number of extensions: 2229909
Number of successful extensions: 41019
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40644
Number of HSP's gapped (non-prelim): 375
length of query: 286
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 264
effective length of database: 17,147,199,772
effective search space: 4526860739808
effective search space used: 4526860739808
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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