ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75f03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY724686.1| Neotyphodium uncinatum LolF-2 (lolF) gene, lolF-2... 48 0.017
2emb|AL365396.10| Human DNA sequence from clone RP11-338N12 on ch... 42 1.1
3emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete se... 40 4.2
6gb|AC128684.4| Homo sapiens 3 BAC RP11-117K16 (Roswell Park Canc... 40 4.2
7gb|AC182701.2| Populus trichocarpa clone Pop1-74K8, complete seq... 40 4.2
8dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
9dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
10dbj|AK104984.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
11dbj|AK073078.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.2
12emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chr... 40 4.2

>gb|AY724686.1| Neotyphodium uncinatum LolF-2 (lolF) gene, lolF-2 allele, complete
            cds; and SeqX (seqX) gene, partial sequence
          Length = 7477

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 51   tttggggcaagctagcacatgcaa 74
            ||||||||||||||||||||||||
Sbjct: 7161 tttggggcaagctagcacatgcaa 7138



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>emb|AL365396.10| Human DNA sequence from clone RP11-338N12 on chromosome 9 Contains a
             phosphoribosyl pyrophosphate synthetase 2 (PRPS2)
             pseudogene, complete sequence
          Length = 114016

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   cttggcagtatgtagttctgg 129
             |||||||||||||||||||||
Sbjct: 28479 cttggcagtatgtagttctgg 28499



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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 88    agacaagtactatatatataacttg 112
             ||||||| |||||||||||||||||
Sbjct: 35202 agacaagaactatatatataacttg 35178



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 88       agacaagtactatatatataacttg 112
                ||||||| |||||||||||||||||
Sbjct: 22826427 agacaagaactatatatataacttg 22826403



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>gb|AC119408.23| Medicago truncatula clone mth2-5f18, complete sequence
          Length = 120127

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    gataacttatatacctggga 29
             ||||||||||||||||||||
Sbjct: 86449 gataacttatatacctggga 86430



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>gb|AC128684.4| Homo sapiens 3 BAC RP11-117K16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80307

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    tatatatataacttggcagt 117
             ||||||||||||||||||||
Sbjct: 62122 tatatatataacttggcagt 62141



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>gb|AC182701.2| Populus trichocarpa clone Pop1-74K8, complete sequence
          Length = 93140

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    aagtactatatatataactt 111
             ||||||||||||||||||||
Sbjct: 71487 aagtactatatatataactt 71468



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                        
Query: 208      agcgcctcgaaacgcgccgtcagggtctcgaagtccagaggcatgttcggatgaac 263
                ||||||||||| || || || || || ||| ||||||||||||| || ||||||||
Sbjct: 21309015 agcgcctcgaagcgtgcagtaagagtttcgtagtccagaggcatatttggatgaac 21309070



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>dbj|AP005862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0038K02
          Length = 118635

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 208   agcgcctcgaaacgcgccgtcagggtctcgaagtccagaggcatgttcggatgaac 263
             ||||||||||| || || || || || ||| ||||||||||||| || ||||||||
Sbjct: 41394 agcgcctcgaagcgtgcagtaagagtttcgtagtccagaggcatatttggatgaac 41449



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>dbj|AK104984.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D03, full
            insert sequence
          Length = 1814

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 208  agcgcctcgaaacgcgccgtcagggtctcgaagtccagaggcatgttcggatgaac 263
            ||||||||||| || || || || || ||| ||||||||||||| || ||||||||
Sbjct: 1499 agcgcctcgaagcgtgcagtaagagtttcgtagtccagaggcatatttggatgaac 1444



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>dbj|AK073078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033016L03, full
            insert sequence
          Length = 1844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 208  agcgcctcgaaacgcgccgtcagggtctcgaagtccagaggcatgttcggatgaac 263
            ||||||||||| || || || || || ||| ||||||||||||| || ||||||||
Sbjct: 1529 agcgcctcgaagcgtgcagtaagagtttcgtagtccagaggcatatttggatgaac 1474



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>emb|CT009564.11| Mouse DNA sequence from clone RP23-16F13 on chromosome 17, complete
              sequence
          Length = 157729

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    cgtcagggtctcgaagtccagagg 248
              ||||||||||| ||||||||||||
Sbjct: 117434 cgtcagggtctggaagtccagagg 117457


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,735,378
Number of Sequences: 3902068
Number of extensions: 2735378
Number of successful extensions: 44545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44512
Number of HSP's gapped (non-prelim): 33
length of query: 322
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 300
effective length of database: 17,147,199,772
effective search space: 5144159931600
effective search space used: 5144159931600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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