ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit... 611 e-172
2ref|NM_184976.1| Oryza sativa (japonica cultivar-group), mRNA 135 9e-29
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 135 9e-29
4gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 geno... 135 9e-29
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 135 9e-29
6dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 9e-29
7dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 9e-29
8dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 9e-29
9gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit prec... 135 9e-29
10gb|AY103687.1| Zea mays PCO106710 mRNA sequence 131 1e-27
11ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-li... 44 0.27
12emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; s... 44 0.27
13emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; s... 44 0.27
14dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.27
15dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
16gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 42 1.1
17gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 geno... 42 1.1
18dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
19dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
20gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 42 1.1
21gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
22emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
23ref|XM_471550.1| Oryza sativa (japonica cultivar-group), predic... 40 4.2
24ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothet... 40 4.2
25gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's H... 40 4.2
26gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 4.2
27emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 40 4.2
28emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 40 4.2
29emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4,... 40 4.2
30gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2
31gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, comp... 40 4.2
32gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, co... 40 4.2
33gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 geno... 40 4.2
34gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, comp... 40 4.2
35gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.2
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
37emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo ... 40 4.2
38emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 4.2
39gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 40 4.2
40gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.2 
>gb|U08135.1|HVU08135 Hordeum vulgare photosystem-I PSI-F subunit precursor mRNA,
           complete cds
          Length = 990

 Score =  611 bits (308), Expect = e-172
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtaaaatacacacgtgtgaagagagaacacaatagttatacaagattgggttcagtttc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 959 ggtaaaatacacacatgtgaagagagaacacaatagttatacaagattgggttcagtttc 900

                                                                       
Query: 61  ttaaatacaagagaggttccatttctccatgatcctatcagctcctacaccaagcccaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 ttaaatacaagagaggttccatttctccatgatcctatcagctcctacaccaagcccaca 840

                                                                       
Query: 121 cagatcgacaccacaagccctcatcctccgctgcccatctgacttgggaccgactagcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 cagatcgacaccacaagccctcatcctccgctgcccatctgacttgggaccgactagcca 780

                                                                       
Query: 181 accacgcacgcatggcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 779 accacgcacgcatggcagctacttagtagccgatgtcggcgtcgtcgacgacgaggtcgc 720

                                                                       
Query: 241 cgttgatgagctcgcggtatgcggcgacgggccagatgaagcccctggggatgatcctgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 cgttgatgagctcgcggtatgcggcgacgggccagatgaagcccctggggatgatcctgg 660

                           
Query: 301 cggcgagctcgacgtc 316
           ||||||||||||||||
Sbjct: 659 cggcgagctcgacgtc 644
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>ref|NM_184976.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1038

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 205 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 778 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 719

                                                               
Query: 265 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 718 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 667



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 57  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 921 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 867
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                            
Query: 205      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 31969474 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 31969533

                                                                    
Query: 265      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 31969534 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 31969585



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 57       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 31969219 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 31969273
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>gb|AC084748.11| Oryza sativa chromosome 3 BAC OSJNBa0010I09 genomic sequence, complete
             sequence
          Length = 144306

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 205   agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
             ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 61426 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 61485

                                                                 
Query: 265   cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
             |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 61486 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 61537



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                    
Query: 57    tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
             |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 61171 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 61225
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                            
Query: 205      agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
                ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 32059986 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 32060045

                                                                    
Query: 265      cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
                |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 32060046 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 32060097



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Plus

                                                                       
Query: 57       tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
                |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 32059731 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 32059785
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>dbj|AK069791.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031N02, full
           insert sequence
          Length = 967

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 205 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 742 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 683

                                                               
Query: 265 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 682 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 631



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 57  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 890 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 836
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>dbj|AK060493.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-D02, full
           insert sequence
          Length = 997

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 205 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 777 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 718

                                                               
Query: 265 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 717 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 666



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 57  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 920 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 866
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>dbj|AK059890.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-C12, full
           insert sequence
          Length = 990

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 205 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 765 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 706

                                                               
Query: 265 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 705 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 654



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 57  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 913 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 859
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>gb|AF093634.1|AF093634 Oryza sativa photosystem-1 F subunit precursor (PSI-F) mRNA,
           complete cds
          Length = 996

 Score =  135 bits (68), Expect = 9e-29
 Identities = 101/112 (90%)
 Strand = Plus / Minus

                                                                       
Query: 205 agtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcgcggtatgcgg 264
           ||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||| ||||
Sbjct: 758 agtagccgatgtcagcgtcgtcgacgacgaggttgccggtgatgagctcacggtaggcgg 699

                                                               
Query: 265 cgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacgtc 316
           |||||||||||||||| ||||| |||| || | || ||||||||||||||||
Sbjct: 698 cgacgggccagatgaaccccctcgggaggagcttgacggcgagctcgacgtc 647



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 57  tttcttaaatacaagagaggttccatttctccatgatcctatcagctcctacacc 111
           |||||||| ||||| |||  ||||||| ||||||||||||||||||| |||||||
Sbjct: 901 tttcttaagtacaacagatcttccattcctccatgatcctatcagcttctacacc 847
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>gb|AY103687.1| Zea mays PCO106710 mRNA sequence
          Length = 1242

 Score =  131 bits (66), Expect = 1e-27
 Identities = 109/122 (89%), Gaps = 1/122 (0%)
 Strand = Plus / Minus

                                                                       
Query: 195 gcagctagttagtagccgatgtcggcgtcgtcgacgacgaggtcgccgttgatgagctcg 254
           ||||||||| |||||||||||||   |||||||||||||||||| |||||||||||||||
Sbjct: 802 gcagctagt-agtagccgatgtccttgtcgtcgacgacgaggtctccgttgatgagctcg 744

                                                                       
Query: 255 cggtatgcggcgacgggccagatgaagcccctggggatgatcctggcggcgagctcgacg 314
           ||||| || ||||||||||||||||| |||||||||| ||  | || |||||||||||||
Sbjct: 743 cggtaggccgcgacgggccagatgaaccccctggggaggaggcgggtggcgagctcgacg 684

             
Query: 315 tc 316
           ||
Sbjct: 683 tc 682
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>ref|NM_197599.1| Oryza sativa (japonica cultivar-group) mucin-like protein
           (OSJNBb0015I11.17), mRNA
          Length = 1110

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 210 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 243
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 386 ccgatgtcggcgtcggcgacgacaaggccgccgt 353
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>emb|AL590464.1|SCO590464 Streptomyces coelicolor plasmid SCP1; segment 2/2
          Length = 178073

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 209   gccgatgtcggcgtcgtcgacgacgaggtcgccg 242
             ||||||||| ||| ||||||||||||| ||||||
Sbjct: 38032 gccgatgtccgcgccgtcgacgacgagctcgccg 38065
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>emb|AL590463.1|SCO590463 Streptomyces coelicolor plasmid SCP1; segment 1/2
          Length = 178000

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 209    gccgatgtcggcgtcgtcgacgacgaggtcgccg 242
              ||||||||| ||| ||||||||||||| ||||||
Sbjct: 127590 gccgatgtccgcgccgtcgacgacgagctcgccg 127557
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 215     gtcggcgtcgtcgacgacgagg 236
               ||||||||||||||||||||||
Sbjct: 1139192 gtcggcgtcgtcgacgacgagg 1139213
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>dbj|AK106264.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-F10, full
           insert sequence
          Length = 1488

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 210 ccgatgtcggcgtcgtcgacgacgaggtcgccgt 243
           ||||||||||||||| ||||||| ||| ||||||
Sbjct: 62  ccgatgtcggcgtcggcgacgacaaggccgccgt 29
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 217     cggcgtcgtcgacgacgaggt 237
               |||||||||||||||||||||
Sbjct: 1949449 cggcgtcgtcgacgacgaggt 1949429
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>gb|AC051633.7| Oryza sativa chromosome 10 BAC OSJNBb0015I11 genomic sequence, complete
              sequence
          Length = 138824

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 211    cgatgtcggcgtcgtcgacgacgaggtcgccgt 243
              |||||||||||||| ||||||| ||| ||||||
Sbjct: 107077 cgatgtcggcgtcggcgacgacaaggccgccgt 107045
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 209      gccgatgtcggcgtcgtcgacgacg 233
                |||||||||| ||||||||||||||
Sbjct: 18403096 gccgatgtcgtcgtcgtcgacgacg 18403072



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 217      cggcgtcgtcgacgacgagg 236
                ||||||||||||||||||||
Sbjct: 12249186 cggcgtcgtcgacgacgagg 12249167
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 211      cgatgtcggcgtcgtcgacgacgaggtcgccgt 243
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20705625 cgatgtcggcgtcggcgacgacaaggccgccgt 20705593



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 216      tcggcgtcgtcgacgacgag 235
                ||||||||||||||||||||
Sbjct: 21068348 tcggcgtcgtcgacgacgag 21068367
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 224     gtcgacgacgaggtcgccgttgatg 248
               |||||||||||||||||||| ||||
Sbjct: 1766710 gtcgacgacgaggtcgccgtcgatg 1766734
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 211      cgatgtcggcgtcgtcgacgacgaggtcgccgt 243
                |||||||||||||| ||||||| ||| ||||||
Sbjct: 20716897 cgatgtcggcgtcggcgacgacaaggccgccgt 20716865



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 216      tcggcgtcgtcgacgacgag 235
                ||||||||||||||||||||
Sbjct: 21079612 tcggcgtcgtcgacgacgag 21079631
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
              complete sequence
          Length = 133413

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 209    gccgatgtcggcgtcgtcgacgacg 233
              |||||||||| ||||||||||||||
Sbjct: 105019 gccgatgtcgtcgtcgtcgacgacg 104995
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>ref|XM_471550.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 837

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 217 cggcgtcgtcgacgacgagg 236
           ||||||||||||||||||||
Sbjct: 214 cggcgtcgtcgacgacgagg 195
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>ref|NM_197655.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0015J15.29), mRNA
          Length = 1440

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 tcggcgtcgtcgacgacgag 235
           ||||||||||||||||||||
Sbjct: 85  tcggcgtcgtcgacgacgag 66
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>gb|AC094571.8| Rattus norvegicus 20 BAC CH230-4L21 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 230137

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    tcttaaatacaagagaggtt 78
             ||||||||||||||||||||
Sbjct: 82654 tcttaaatacaagagaggtt 82673
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     tgtcggcgtcgtcgacgacg 233
               ||||||||||||||||||||
Sbjct: 1625246 tgtcggcgtcgtcgacgacg 1625227
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
              sequence
          Length = 173580

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 81     atttctccatgatcctatcagctcctac 108
              ||||||||||||||| |||| |||||||
Sbjct: 156375 atttctccatgatccaatcacctcctac 156348
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 217    cggcgtcgtcgacgacgagg 236
              ||||||||||||||||||||
Sbjct: 228093 cggcgtcgtcgacgacgagg 228112
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>emb|AL662955.3|OSJN00158 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0019J05,
             complete sequence
          Length = 185211

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   cggcgtcgtcgacgacgagg 236
             ||||||||||||||||||||
Sbjct: 74067 cggcgtcgtcgacgacgagg 74048
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>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
              complete sequence
          Length = 145070

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 215    gtcggcgtcgtcgacgacgaggtcgccg 242
              |||| ||||||||||||||| |||||||
Sbjct: 102007 gtcgtcgtcgtcgacgacgacgtcgccg 102034
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>gb|AC087698.5| Homo sapiens chromosome 8, clone RP11-25K19, complete sequence
          Length = 150750

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    caagattgggttcagtttct 61
             ||||||||||||||||||||
Sbjct: 10979 caagattgggttcagtttct 10998
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>gb|AC105282.5| Homo sapiens chromosome 18, clone RP11-452F20, complete sequence
          Length = 167258

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    ggttcagtttcttaaataca 69
             ||||||||||||||||||||
Sbjct: 17437 ggttcagtttcttaaataca 17456
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>gb|AC026758.8| Oryza sativa chromosome 10 BAC OSJNBa0015J15 genomic sequence, complete
              sequence
          Length = 144798

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 216    tcggcgtcgtcgacgacgag 235
              ||||||||||||||||||||
Sbjct: 137358 tcggcgtcgtcgacgacgag 137339
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>gb|AC090152.4| Homo sapiens chromosome 8, clone RP11-554M1, complete sequence
          Length = 118755

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    caagattgggttcagtttct 61
             ||||||||||||||||||||
Sbjct: 14523 caagattgggttcagtttct 14504
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 215     gtcggcgtcgtcgacgacga 234
               ||||||||||||||||||||
Sbjct: 3776403 gtcggcgtcgtcgacgacga 3776422
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 215     gtcggcgtcgtcgacgacgaggtcgccg 242
               |||| ||||||||||||||| |||||||
Sbjct: 4734002 gtcgtcgtcgtcgacgacgacgtcgccg 4734029
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>emb|AL513406.1|CNS07EFT Human DNA sequence chromosome 8 of Homo sapiens (human)
          Length = 204955

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 42     caagattgggttcagtttct 61
              ||||||||||||||||||||
Sbjct: 141244 caagattgggttcagtttct 141225
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 229     cgacgaggtcgccgttgatgagct 252
               ||||||||||| ||||||||||||
Sbjct: 1147951 cgacgaggtcgtcgttgatgagct 1147974
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 71     gagaggttccatttctccat 90
              ||||||||||||||||||||
Sbjct: 418732 gagaggttccatttctccat 418713
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>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
            complete sequence
          Length = 187956

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 215  gtcggcgtcgtcgacgacgaggtcgccg 242
            |||| ||||||||||||||| |||||||
Sbjct: 6410 gtcgtcgtcgtcgacgacgacgtcgccg 6437


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,408,873
Number of Sequences: 3902068
Number of extensions: 2408873
Number of successful extensions: 48002
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47065
Number of HSP's gapped (non-prelim): 937
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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