>TBP_XENLA (P27633) TATA-box-binding protein (TATA-box factor) (TATA-binding|
           factor) (TATA sequence-binding protein) (Transcription
           initiation factor TFIID TBP subunit)
          Length = 297

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 39  IREKQTHEEQNEMRHILHTI*T*QGANRRIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSP 218
           I E+Q  ++Q   +  L       G   +++HP   T +PL G    Y +  TP + +SP
Sbjct: 50  ILEEQQRQQQQTQQSTLQQGNQGSGQTPQLFHPQTLTTAPLPGNTPLYPSPITPMTPISP 109

Query: 219 A 221
           A
Sbjct: 110 A 110

>ATG3_EMENI (Q5AVG2) Autophagy-related protein 3 (Autophagy-related E2-like|
           conjugation enzyme atg3)
          Length = 787

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 74  DETYITHDLNVTRSKQKNLPPAPFHIIPPHWSLFIIQYNTDAP 202
           D T  TH+    R K +++P +PF ++PP   L I  Y  D P
Sbjct: 507 DSTTPTHN----RFKLQSMPESPFLLLPPELRLQIYSYVLDIP 545

>NUKC_MESVI (Q9MUR0) NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain K)
           (NADH-plastoquinone oxidoreductase subunit K)
          Length = 247

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 126 IYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPA 221
           I H L  +    TG YL+ S  QTPP SLS A
Sbjct: 198 IKHELTLSSPVYTGKYLNSSARQTPPRSLSEA 229

>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box|
           protein 8) (RNA helicase HRH1)
          Length = 1220

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 QYNTDAPIFPIPGRLPPAIDVYTDGP 259
           QY  +APIF IPGR  P   +YT  P
Sbjct: 727 QYFYEAPIFTIPGRTYPVEILYTKEP 752

>SOX9_PIG (O18896) Transcription factor SOX-9|
          Length = 509

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/93 (23%), Positives = 35/93 (37%)
 Frame = +1

Query: 16  TTSLLQSGSEKNKHMKNRTR*DIYYTRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYR 195
           TT   + G  +  H+K       +Y+  ++   Q    +  ++ HY PS   I       
Sbjct: 383 TTLSSEPGQSQRTHIKTEQLSPSHYSEQQQHSPQQIAYSPFNLPHYSPSYPPI------T 436

Query: 196 RPHLPYPRPSSSGDRRIHGRSNATLLLMDGDYM 294
           R    Y    +SG    H RS  ++L     YM
Sbjct: 437 RSQYDYTDHQNSGSYYSHARSQGSVLYSTFTYM 469

>ALDH2_BACSU (P39616) Probable aldehyde dehydrogenase ywdH (EC 1.2.1.3)|
          Length = 457

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 132 HPLHFTLSPLTGPYLSYSTIQTPPSSLSPAV 224
           +PL   LSPL G   + +T+   PS  +PAV
Sbjct: 117 YPLQLALSPLIGAIAAGNTVVLKPSEYTPAV 147

>CADH1_ARACO (P42495) Cinnamyl-alcohol dehydrogenase 1 (EC 1.1.1.195) (CAD)|
          Length = 360

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +3

Query: 51  QTHEEQNEMRHILHTI*T*QGANRRIYHPL--HFTLSPLTGPYLSYSTIQTPPSSLSPAV 224
           Q  E  + + +I+ T+         ++HPL  + +L  L G  +    I TP   +SP V
Sbjct: 238 QMQEAADSLDYIIDTV--------PVFHPLEPYLSLLKLDGKLILMGVINTPLQFISPMV 289

Query: 225 FLRRSTYT 248
            L R   T
Sbjct: 290 MLGRKAIT 297

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
 Frame = +1

Query: 88  YTRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPRPS------SSGDRRIH 249
           Y + ER++E+    + R   H    +      V  RRP  P   PS      S  +RR++
Sbjct: 697 YRQRERERERERFESDRDRDHERRPIERSQSPVHLRRPQSPGASPSQAERLPSDSERRLY 756

Query: 250 GRSN 261
            RS+
Sbjct: 757 SRSS 760

>OL502_MOUSE (Q8VG09) Olfactory receptor 502 (Olfactory receptor 204-8)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = +3

Query: 123 RIYHPLHFTLSPLTGPYLSYSTIQTPP------------SSLSPAVFLRRSTYTRTVQCY 266
           +++HP++F LS L    + YS+  TP             S L   + L  + +  TV+C+
Sbjct: 57  QLHHPMYFFLSHLASADIGYSSSVTPNMLVNFLVERNTISYLGCGIQLGSAVFFGTVECF 116

Query: 267 L 269
           L
Sbjct: 117 L 117

>OL493_MOUSE (Q8VEW5) Olfactory receptor 493 (Olfactory receptor 204-35)|
          Length = 314

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = +3

Query: 123 RIYHPLHFTLSPLTGPYLSYSTIQTPP------------SSLSPAVFLRRSTYTRTVQCY 266
           +++HP++F LS L    + YS+  TP             S L   + L  + +  TV+C+
Sbjct: 57  QLHHPMYFFLSHLASVDIGYSSSVTPNMLANFLVEKNTISYLGCTIQLSLAAFCGTVECF 116

Query: 267 L 269
           L
Sbjct: 117 L 117

>BCOR_MOUSE (Q8CGN4) BCoR protein (BCL-6 corepressor)|
          Length = 1759

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 91  TRSERDKEQTEESTTRSISHYPPSLVLIYHTVQYRRPHLPYPR 219
           T S+  K   E S   S +  PP+ + +     +R P +PYPR
Sbjct: 614 TSSKGAKANPEPSFKASENGLPPTSIFLSPNEAFRSPAIPYPR 656

>OL482_MOUSE (Q8VG03) Olfactory receptor 482 (Olfactory receptor 204-14)|
          Length = 323

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +3

Query: 123 RIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPAVFLRRSTYTRTVQCYLAFDGRGLHG 296
           +++HP++F LS L    L YS+  TP   ++   FL  +     + C + F      G
Sbjct: 57  QLHHPMYFFLSHLASVDLGYSSSVTPNMLIN---FLAENNTISYIGCSIQFGSATFFG 111

>UL16_VZVD (P09293) Gene 44 protein|
          Length = 363

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 104 VTRSKQKNLPPAPFHII 154
           +TR +Q NLPP  FH+I
Sbjct: 82  ITRPRQMNLPPKTFHVI 98

>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-5 (EC 3.6.1.-) (Sex determination protein
           mog-5) (Masculinization of germ line protein 5)
          Length = 1200

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 182 QYNTDAPIFPIPGRLPPAIDVYTDGP 259
           +Y  +APIF IPGR  P   +YT  P
Sbjct: 702 EYFLEAPIFTIPGRTFPVEILYTREP 727

>OR5P2_HUMAN (Q8WZ92) Olfactory receptor 5P2 (Olfactory receptor-like protein|
           JCG3)
          Length = 322

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
 Frame = +3

Query: 123 RIYHPLHFTLSPLTGPYLSYSTIQTP------------PSSLSPAVFLRRSTYTRTVQCY 266
           +++HP++F LS L    ++YS+  TP             S L  A+ L  + +  TV+C 
Sbjct: 50  QLHHPMYFFLSHLAFADMAYSSSVTPNMLVNFLVERNTVSYLGCAIQLGSAAFFATVECV 109

Query: 267 L 269
           L
Sbjct: 110 L 110

>CHRC_CUCSA (Q96398) Chromoplast-specific carotenoid-associated protein,|
           chloroplast precursor
          Length = 322

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +2

Query: 104 VTRSKQKNLPPAPFHIIPPHWSLFIIQYNTDAPIFPIPGRLPPAIDV 244
           +T+ + KN  PAP   +      +I+ Y T A +FP+  R  P + V
Sbjct: 128 ITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSRNLPLVKV 174

>DHX16_CAEEL (O45244) Probable pre-mRNA-splicing factor ATP-dependent RNA|
           helicase mog-4 (EC 3.6.1.-) (Sex determination protein
           mog-4) (Masculinization of germ line protein 4)
          Length = 1008

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +2

Query: 194 DAPIFPIPGRLPPAIDVYTDGP 259
           DAPIF IPGR  P    YT  P
Sbjct: 531 DAPIFRIPGRRFPVDIYYTQAP 552

>OL484_MOUSE (Q8VFD3) Olfactory receptor 484 (Olfactory receptor 204-16)|
          Length = 321

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +3

Query: 123 RIYHPLHFTLSPLTGPYLSYSTIQTPPSSLSPAVFLRRSTYTRTVQCYLAFDGRGLHG 296
           +++HP++F LS L    + YS+  TP   ++   FL +      + C + F      G
Sbjct: 57  QLHHPMYFFLSHLASADIGYSSSVTPNMLVN---FLVKQNTISYIGCSIQFGSAAFFG 111


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,610,681
Number of Sequences: 219361
Number of extensions: 969573
Number of successful extensions: 3022
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3018
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)