ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet75d05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01, complete sequence Length = 140454 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 43154 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 43213 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 43214 gatgcagtgacctctcaacttccatctgatgtctcct 43250
>dbj|AB236018.1| Oryza environmental sample genomic DNA, clone: 1B4-2 Length = 363 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Minus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 317 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 258 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 257 gatgcagtgacctctcaacttccatctgatgtctcct 221
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 26506267 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 26506326 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 26506327 gatgcagtgacctctcaacttccatctgatgtctcct 26506363
>dbj|AK104359.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-B09, full insert sequence Length = 1153 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Minus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 976 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 917 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 916 gatgcagtgacctctcaacttccatctgatgtctcct 880
>dbj|AK070732.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063I18, full insert sequence Length = 1220 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Minus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 1037 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 978 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 977 gatgcagtgacctctcaacttccatctgatgtctcct 941
>dbj|AK065326.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002F03, full insert sequence Length = 3579 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Minus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 2655 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 2596 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 2595 gatgcagtgacctctcaacttccatctgatgtctcct 2559
>emb|AL442109.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B1011H02, complete sequence Length = 40167 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 5087 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 5146 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 5147 gatgcagtgacctctcaacttccatctgatgtctcct 5183
>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08, complete sequence Length = 171551 Score = 105 bits (53), Expect = 9e-20 Identities = 86/97 (88%) Strand = Plus / Plus Query: 202 tctttcttcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatct 261 |||| ||||||||||||||||| |||| ||||||||| || ||||||||||||||||||| Sbjct: 146907 tcttgcttcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatct 146966 Query: 262 ggtgcagggacctctccacctccatctgctgcctcct 298 | ||||| |||||||| || |||||||| || ||||| Sbjct: 146967 gatgcagtgacctctcaacttccatctgatgtctcct 147003
>ref|XM_473273.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 762 Score = 99.6 bits (50), Expect = 5e-18 Identities = 80/90 (88%) Strand = Plus / Minus Query: 209 tcagaacaagagcagacacaacaccacaaacacaaagaggaagaaccagatctggtgcag 268 ||||||||||||||| |||| ||||||||| || |||||||||||||||||||| ||||| Sbjct: 762 tcagaacaagagcaggcacagcaccacaaaaacgaagaggaagaaccagatctgatgcag 703 Query: 269 ggacctctccacctccatctgctgcctcct 298 |||||||| || |||||||| || ||||| Sbjct: 702 tgacctctcaacttccatctgatgtctcct 673
>ref|XM_466971.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1462 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 1186 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1138
>ref|XM_506883.1| PREDICTED Oryza sativa (japonica cultivar-group), P0010C01.23-1 mRNA Length = 2039 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 25690383 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 25690431
>dbj|AP004768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0010C01 Length = 186185 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 93059 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 93107
>dbj|AK105980.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F11, full insert sequence Length = 2038 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 1701 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1653
>dbj|AK071904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063D05, full insert sequence Length = 1462 Score = 81.8 bits (41), Expect = 1e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 246 aggaagaaccagatctggtgcagggacctctccacctccatctgctgcc 294 ||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct: 1185 aggaagaaccatatctggtgcagggacctctccacctccatgtgctgcc 1137
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 225 cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 284 |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || ||| Sbjct: 2682661 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682720 Query: 285 atctgctgcctcct 298 |||||||| ||||| Sbjct: 2682721 atctgctgtctcct 2682734
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 225 cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 284 |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || ||| Sbjct: 2682605 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 2682664 Query: 285 atctgctgcctcct 298 |||||||| ||||| Sbjct: 2682665 atctgctgtctcct 2682678
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 75.8 bits (38), Expect = 8e-11 Identities = 65/74 (87%) Strand = Plus / Plus Query: 225 cacaacaccacaaacacaaagaggaagaaccagatctggtgcagggacctctccacctcc 284 |||| ||||||| | || |||||||||||||||||||| ||||| |||||||| || ||| Sbjct: 51587 cacagcaccacagaaactaagaggaagaaccagatctgatgcagcgacctctcaacttcc 51646 Query: 285 atctgctgcctcct 298 |||||||| ||||| Sbjct: 51647 atctgctgtctcct 51660
>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence Length = 208274 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cacaaacacaaagaggaaga 252 |||||||||||||||||||| Sbjct: 182985 cacaaacacaaagaggaaga 183004
>gb|DQ504427.1| Homo sapiens DNA cross-link repair 1C (PSO2 homolog, S. cerevisiae) (DCLRE1C) gene, complete cds Length = 50007 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 138 agtatatcatgccttccaatatat 161 |||||||||||| ||||||||||| Sbjct: 6424 agtatatcatgcattccaatatat 6401
>gb|AC122308.3| Mus musculus BAC clone RP23-288M6 from chromosome 9, complete sequence Length = 142409 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cacccattcatcagtatctt 115 |||||||||||||||||||| Sbjct: 15638 cacccattcatcagtatctt 15619
>ref|XM_548232.2| PREDICTED: Canis familiaris similar to Peripheral-type benzodiazepine receptor-associated protein 1 (PRAX-1) (Peripheral benzodiazepine receptor interacting protein) (PBR-IP) (RIM binding protein 1) (RIM-BP1) (LOC491112), mRNA Length = 5424 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 275 ctccacctccatctgctgcctcct 298 ||||||||||| |||||||||||| Sbjct: 1116 ctccacctccagctgctgcctcct 1093
>ref|XM_547070.2| PREDICTED: Canis familiaris similar to apolipoprotein B48 receptor (LOC489950), mRNA Length = 3654 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tctggtgcagggacctctcc 278 |||||||||||||||||||| Sbjct: 1814 tctggtgcagggacctctcc 1795
>ref|XM_663202.1| Cryptosporidium hominis TU502 vacuolar protein sorting-associated protein (Chro.30060) partial mRNA Length = 13242 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 281 ctccatctgctgcctccttagccg 304 ||||||||||||||||||| |||| Sbjct: 919 ctccatctgctgcctcctttgccg 896
>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence Length = 175181 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 cacaaacacaaagaggaaga 252 |||||||||||||||||||| Sbjct: 25284 cacaaacacaaagaggaaga 25303
>emb|AL592046.7| Human DNA sequence from clone RP11-155O24 on chromosome X Contains part of the gene for upstream regulatory element binding protein 1 (UREB1) and a CpG island, complete sequence Length = 86196 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agaggaagaaccagatctgg 263 |||||||||||||||||||| Sbjct: 27748 agaggaagaaccagatctgg 27767
>emb|AL360083.27| Human DNA sequence from clone RP11-2K17 on chromosome 10 Contains the 3' end of the gene for suppressor of variegation 3-9 (Drosophila) homolog 2; hypothetical protein FLJ23414 (SUV39H2)(FLJ23414), the DCLRE1C gene for DNA cross-link repair 1C (PSO2 homolog, S.cerevisiae) (SCIDA, SNM1C, ARTEMIS, RS-SCID,DCLREC1C, FLJ11360), the gene for a novel protein similar to mouse Meig1 (Meg1)(meiosis expressed gene 1), a novel gene, a seven transmembrane receptor (Rhodopsin family) pseudogene and two CpG islands, complete sequence Length = 94963 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 138 agtatatcatgccttccaatatat 161 |||||||||||| ||||||||||| Sbjct: 50043 agtatatcatgcattccaatatat 50066
>emb|AL158069.16| Human DNA sequence from clone RP13-57D9 on chromosome Xq11.2-13.2 Contains the gene for TED protein (TED), the 5' end of the ED1 gene for ectodermal dysplasia 1, anhidrotic, two novel genes and three CpG islands, complete sequence Length = 186538 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 accattccttaccctctctt 78 |||||||||||||||||||| Sbjct: 28324 accattccttaccctctctt 28343
>gb|AC166325.1| Mus musculus BAC clone RP24-421O23 from chromosome 13, complete sequence Length = 192167 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccgttaacacttaacagcat 56 |||||||||||||||||||| Sbjct: 163618 ccgttaacacttaacagcat 163599
>gb|AC153993.23| Mus musculus 6 BAC RP24-568N16 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 188187 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 ttctttttcctcgagaagca 138 |||||||||||||||||||| Sbjct: 10588 ttctttttcctcgagaagca 10607
>emb|AL645904.13| Mouse DNA sequence from clone RP23-121P11 on chromosome 11 Contains the gene for a novel protein (1700121K02Rik), the Hnrph1 gene for heterogeneous nuclear ribonucleoprotein H1, the Rufy1 gene for RUN and FYVE domain containing 1, a novel pseudogene and three CpG islands, complete sequence Length = 193696 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccttaccctctcttcatcac 84 |||||||||||||||||||| Sbjct: 428 ccttaccctctcttcatcac 447
>emb|CR354603.12| Zebrafish DNA sequence from clone CH211-106J11 in linkage group 24, complete sequence Length = 159582 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 219 agcagacacaacaccacaaacaca 242 ||||||||||||||||||| |||| Sbjct: 25137 agcagacacaacaccacaagcaca 25160
>emb|AL646002.6| Mouse DNA sequence from clone RP23-237P10 on chromosome 11 Contains gene D930008C07Rik, the Canx gene for calnexin, a high mobility group nucleosomal binding domain 2 (Hmgn2) pseudogene and two CpG islands, complete sequence Length = 113907 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 ccttaccctctcttcatcac 84 |||||||||||||||||||| Sbjct: 112335 ccttaccctctcttcatcac 112354
>gb|DP000006.1| Oryctolagus cuniculus target 1 genomic scaffold Length = 1889755 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agaggaagaaccagatctgg 263 |||||||||||||||||||| Sbjct: 1681800 agaggaagaaccagatctgg 1681819
>gb|AC154257.2| Mus musculus BAC clone RP24-211E15 from chromosome 13, complete sequence Length = 152267 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccgttaacacttaacagcat 56 |||||||||||||||||||| Sbjct: 42033 ccgttaacacttaacagcat 42014
>gb|AC122152.3| Oryctolagus cuniculus clone LB1-297M16, complete sequence Length = 189392 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 agaggaagaaccagatctgg 263 |||||||||||||||||||| Sbjct: 133597 agaggaagaaccagatctgg 133616
>gb|AF034084.1|AF034084 Esox lucius arylalkylamine N-acetyltransferase (AANAT1) gene, partial cds Length = 519 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 aaccattccttaccctctct 77 |||||||||||||||||||| Sbjct: 39 aaccattccttaccctctct 20
>dbj|AP001731.1| Homo sapiens genomic DNA, chromosome 21q, section 75/105 Length = 340000 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctccatctgctgcctcctt 299 |||||||||||||||||||| Sbjct: 44491 cctccatctgctgcctcctt 44472
>emb|CT025696.10| Mouse DNA sequence from clone RP24-344B20 on chromosome 9, complete sequence Length = 163726 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cacccattcatcagtatctt 115 |||||||||||||||||||| Sbjct: 114131 cacccattcatcagtatctt 114150
>gb|AC153996.3| Mus musculus 6 BAC RP24-385J11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155517 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 ttctttttcctcgagaagca 138 |||||||||||||||||||| Sbjct: 33158 ttctttttcctcgagaagca 33139
>dbj|AP000161.1| Homo sapiens genomic DNA, chromosome 21q22.2, DSCR region, clone D47-S479, segment 13/16, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctccatctgctgcctcctt 299 |||||||||||||||||||| Sbjct: 30908 cctccatctgctgcctcctt 30889
>dbj|AP000019.2| Homo sapiens genomic DNA of 21q22.2 Down Syndrome region, segment 10/13 Length = 100000 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctccatctgctgcctcctt 299 |||||||||||||||||||| Sbjct: 65304 cctccatctgctgcctcctt 65285
>dbj|AP001425.1| Homo sapiens genomic DNA, chromosome 21q22.2, clone:S440, LB7T-ERG region, complete sequence Length = 60193 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 cctccatctgctgcctcctt 299 |||||||||||||||||||| Sbjct: 25323 cctccatctgctgcctcctt 25304 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,881,711 Number of Sequences: 3902068 Number of extensions: 3881711 Number of successful extensions: 98497 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98323 Number of HSP's gapped (non-prelim): 174 length of query: 332 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 310 effective length of database: 17,147,199,772 effective search space: 5315631929320 effective search space used: 5315631929320 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
