>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 36/38 (94%), Positives = 37/38 (97%)
 Frame = -2

Query: 262 GKGAQQGTLPVPEGCPDQNAKNYDPTARNDDGSCLYTF 149
           GKGAQQGTLPVPEGC DQNAKNYDPTAR+DDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 64.3 bits (155), Expect = 8e-11
 Identities = 27/38 (71%), Positives = 32/38 (84%)
 Frame = -2

Query: 262 GKGAQQGTLPVPEGCPDQNAKNYDPTARNDDGSCLYTF 149
           GKGAQQ  LPVPEGC D  A+N+DPTAR+DDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 63.2 bits (152), Expect = 2e-10
 Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 1/40 (2%)
 Frame = -2

Query: 265 GGKGAQQ-GTLPVPEGCPDQNAKNYDPTARNDDGSCLYTF 149
           GG+ AQQ G +PVPEGC D  A NYDPTAR+DDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 26/36 (72%), Positives = 29/36 (80%)
 Frame = -2

Query: 262 GKGAQQGTLPVPEGCPDQNAKNYDPTARNDDGSCLY 155
           GK AQQ +LPV +GC D  AKNYDPTAR+DDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,562,861
Number of Sequences: 219361
Number of extensions: 679327
Number of successful extensions: 1875
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1875
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)