ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75d04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 484 e-134
2gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 416 e-113
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 391 e-106
4gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 256 3e-65
5gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 242 5e-61
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 184 1e-43
7gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 161 1e-36
8dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
9dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
10dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
11dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
12dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 119 5e-24
13gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 117 2e-23
14gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 117 2e-23
15gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 117 2e-23
16dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 117 2e-23
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 117 2e-23
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 117 2e-23
19dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 117 2e-23
20gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 105 7e-20
21dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 103 3e-19
22gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 1e-18
23dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
24dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
25gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 52 0.001
26gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 52 0.001
27gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 52 0.001
28gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 52 0.001
29gb|AC132122.2| Mus musculus chromosome 7 clone RP24-78F23, compl... 44 0.23
30gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosom... 44 0.23
31gb|AC092713.2| Homo sapiens chromosome 17, clone CTC-780D20, com... 44 0.23
32gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-5... 44 0.23
33emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c... 44 0.23
34ref|XM_463688.1| Oryza sativa (japonica cultivar-group), predic... 42 0.90
35gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, co... 42 0.90
36gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp... 42 0.90
37gb|AC119034.2| Homo sapiens 3 BAC RP11-303O22 (Roswell Park Canc... 42 0.90
38gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp... 42 0.90
39gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, c... 42 0.90
40gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, com... 42 0.90
41dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIK... 42 0.90
42dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
43dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
44emb|AL133299.4|CNS01DUN Human chromosome 14 DNA sequence BAC R-6... 42 0.90
45gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp... 42 0.90
46emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2... 42 0.90
47dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.90
48ref|XM_631241.1| Dictyostelium discoideum hypothetical protein (... 40 3.5
49gb|AC185247.2| Pan troglodytes BAC clone CH251-7D5 from chromoso... 40 3.5
50gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, compl... 40 3.5
51emb|CR954197.2| Medicago truncatula chromosome 5 clone mte1-80m7... 40 3.5
52gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, comp... 40 3.5
53emb|AL954185.6| Human DNA sequence from clone RP11-282E4 on chro... 40 3.5
54emb|AL359955.25| Human DNA sequence from clone RP11-460N11 on ch... 40 3.5
55emb|AL359510.24| Human DNA sequence from clone RP11-520H14 on ch... 40 3.5
56emb|AL138715.11| Human DNA sequence from clone RP11-77P19 on chr... 40 3.5
57gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc... 40 3.5
58gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, com... 40 3.5
59emb|BX001034.6| Human DNA sequence from clone RP11-21H4 on chrom... 40 3.5
60gb|AC183272.3| Pan troglodytes BAC clone CH251-396D11 from chrom... 40 3.5
61gb|AC125634.1| Homo sapiens 3 BAC RP11-512E23 (Roswell Park Canc... 40 3.5
62gb|AC182642.2| Pan troglodytes BAC clone CH251-216C21 from chrom... 40 3.5
63dbj|AK094778.1| Homo sapiens cDNA FLJ37459 fis, clone BRAWH2011204 40 3.5
64gb|AC125393.6| Pan troglodytes clone rp43-22m15, complete sequence 40 3.5
65gb|AC108695.2| Homo sapiens 3 BAC RP11-744C8 (Roswell Park Cance... 40 3.5
66dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 3.5
67gb|AC182470.3| Pan troglodytes BAC clone CH251-440F19 from chrom... 40 3.5
68emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 3.5
69gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 2... 40 3.5
70gb|AC098826.4| Homo sapiens BAC clone RP11-629P16 from 2, comple... 40 3.5
71gb|AC108715.2| Homo sapiens 3 BAC RP11-184F3 (Roswell Park Cance... 40 3.5
72ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 3.5
73gb|AC004756.1|AC004756 Homo sapiens chromosome 17, clone hCIT.50... 40 3.5
74emb|AL445643.12| Human DNA sequence from clone RP11-350D23 on ch... 40 3.5
75gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23... 40 3.5
76emb|AJ972910.2| Brachidontes pharaonis partial mdr1 gene for put... 40 3.5
77emb|BX000449.4| Human DNA sequence from clone RP11-287N12 on chr... 40 3.5 
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  484 bits (244), Expect = e-134
 Identities = 259/264 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    gacaaatgataagtaggtgtattggtctttgccaaatgggtaaactcaatatatttagag 60
            |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 7786 gacaaatgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagag 7727

                                                                        
Query: 61   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7726 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttaggtaggtaaa 7667

                                                                        
Query: 121  acatcaaatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgttcc 180
            |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7666 acatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcc 7607

                                                                        
Query: 181  ttgccgttgggtcgtagttcttggcattttggtcggggcaaccttccggcacgggcaaag 240
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7606 ttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaag 7547

                                    
Query: 241  taccttgctgtgctcctttacctc 264
            ||||||||||||||||||||||||
Sbjct: 7546 taccttgctgtgctcctttacctc 7523
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  416 bits (210), Expect = e-113
 Identities = 225/230 (97%)
 Strand = Plus / Minus

                                                                        
Query: 33   caaatgggtaaactcaatatatttagagatatattaacaaaacatgcccagcaatcgctt 92
            |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1394 caaatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgctt 1335

                                                                        
Query: 93   ggatgcgatgcggacttaggtaggtaaaacatcaaatattaaaagtggcatgcttaaaag 152
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1334 ggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1275

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcattttgg 212
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1274 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 1215

                                                              
Query: 213  tcggggcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 262
            |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1214 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  391 bits (197), Expect = e-106
 Identities = 240/249 (96%), Gaps = 4/249 (1%)
 Strand = Plus / Minus

                                                                        
Query: 28   tttgccaaatgggtaaactcaatat-atttagagatatattaacaaaacatgcccagcaa 86
            ||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1709 tttgccaaatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaa 1650

                                                                        
Query: 87   tcgcttggatgcgatgcggacttag-gtaggtaaaacatcaaatattaaaagtggcatgc 145
            ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 1649 tcgcttggatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgc 1590

                                                                        
Query: 146  ttaaaaggtgtaaaggcagctgccg-tcgtcgttccttgccgttgggtcgtagttcttgg 204
            ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1589 ttaaaaggtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttgg 1530

                                                                        
Query: 205  cattttggtcggggcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacct 263
            |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1529 cattttggtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacct 1470

                     
Query: 264  cctcctatg 272
            |||||||||
Sbjct: 1469 cctcctatg 1461
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  256 bits (129), Expect = 3e-65
 Identities = 240/274 (87%), Gaps = 11/274 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   aatgataagtaggtgtattggtctttgccaaatgggtaaactcaatatatttagagatat 64
           ||||||||||||   |||| |||||| |||||| |||| ||||||||| ||||    |||
Sbjct: 798 aatgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta----tat 743

                                                                       
Query: 65  attaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----ggta 118
           ||||||||||||||||||||||||||||||||||||||||| |||||||||     | ||
Sbjct: 742 attaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaaggata 683

                                                                       
Query: 119 aaacatcaaatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgtt 178
           |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||  |
Sbjct: 682 aaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtcact 624

                                                                       
Query: 179 ccttgccgttgggtcgtagttcttggcattttggtcggggcaaccttccggcacgggcaa 238
           ||| |||||||||||| ||||||||||| | ||||||| ||| ||| |||| || |||||
Sbjct: 623 cctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacaggcaa 564

                                             
Query: 239 agtaccttgctgtgctcctttacctcctcctatg 272
           ||||||||||||||| ||||||||||||||||||
Sbjct: 563 agtaccttgctgtgcccctttacctcctcctatg 530
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  242 bits (122), Expect = 5e-61
 Identities = 196/218 (89%), Gaps = 7/218 (3%)
 Strand = Plus / Minus

                                                                        
Query: 61   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 114
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 115  ggtaaaacatcaaatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 174
            | |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 175  cgttccttgccgttgggtcgtagttcttggcattttggtcggggcaaccttccggcacgg 234
            |  |||| |||||||||||| ||||||||||| | ||||||| ||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                                  
Query: 235  gcaaagtaccttgctgtgctcctttacctcctcctatg 272
            ||||||||||||||||||| ||||||||||||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatg 1380
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  184 bits (93), Expect = 1e-43
 Identities = 179/205 (87%), Gaps = 7/205 (3%)
 Strand = Plus / Minus

                                                                        
Query: 75   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatca-a 127
            ||||||||||| ||||||| |||||||||||  ||||||||      || |||||||| |
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 128  atattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgt 187
            ||| | ||||||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 188  tgggtcgtagttcttggcattttggtcggggcaaccttccggcacgggcaaagtaccttg 247
            ||||||| ||||||||||||   ||||||  |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                     
Query: 248  ctgtgctcctttacctcctcctatg 272
             ||||||||||||||||||||||||
Sbjct: 1413 ttgtgctcctttacctcctcctatg 1389
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  161 bits (81), Expect = 1e-36
 Identities = 117/129 (90%)
 Strand = Plus / Minus

                                                                        
Query: 134  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtc 193
            ||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 194  gtagttcttggcattttggtcggggcaaccttccggcacgggcaaagtaccttgctgtgc 253
            | ||||||||||||   ||||||  |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 254  tcctttacc 262
            |||||||||
Sbjct: 1369 tcctttacc 1361
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  119 bits (60), Expect = 5e-24
 Identities = 113/130 (86%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1394 ccctcctcct 1385
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  119 bits (60), Expect = 5e-24
 Identities = 113/130 (86%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1432 ccctcctcct 1423
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  119 bits (60), Expect = 5e-24
 Identities = 113/130 (86%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1431 ccctcctcct 1422
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  119 bits (60), Expect = 5e-24
 Identities = 113/130 (86%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1215 ccctcctcct 1206
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  119 bits (60), Expect = 5e-24
 Identities = 113/130 (86%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1436 ccctcctcct 1427
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                          
Query: 143    tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
              |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 203    ggcattttggtcggggcaaccttccggcacgggca 237
              ||||    |||||| ||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 46.1 bits (23), Expect = 0.057
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                     
Query: 161    gcagctgccgtcgtcgttccttgccgttgggtcgtagtt 199
              |||||||||||||||| |||| || || |||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 112091
to top
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                         
Query: 143   tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
             |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 203   ggcattttggtcggggcaaccttccggcacgggca 237
             ||||    |||||| ||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 46.1 bits (23), Expect = 0.057
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                    
Query: 161   gcagctgccgtcgtcgttccttgccgttgggtcgtagtt 199
             |||||||||||||||| |||| || || |||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 33968
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 203  ggcattttggtcggggcaaccttccggcacgggca 237
            ||||    |||||| ||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 203  ggcattttggtcggggcaaccttccggcacgggca 237
            ||||    |||||| ||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                            
Query: 143      tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
                |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 203      ggcattttggtcggggcaaccttccggcacgggca 237
                ||||    |||||| ||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 46.1 bits (23), Expect = 0.057
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 161      gcagctgccgtcgtcgttccttgccgttgggtcgtagtt 199
                |||||||||||||||| |||| || || |||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28307230
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Plus

                                                                            
Query: 143      tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
                |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 203      ggcattttggtcggggcaaccttccggcacgggca 237
                ||||    |||||| ||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 46.1 bits (23), Expect = 0.057
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                       
Query: 161      gcagctgccgtcgtcgttccttgccgttgggtcgtagtt 199
                |||||||||||||||| |||| || || |||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagtt 28289679
to top
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  117 bits (59), Expect = 2e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 203  ggcattttggtcggggcaaccttccggcacgggca 237
            ||||    |||||| ||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  105 bits (53), Expect = 7e-20
 Identities = 80/89 (89%)
 Strand = Plus / Minus

                                                                       
Query: 149 aaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcatt 208
           |||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 209 ttggtcggggcaaccttccggcacgggca 237
             |||||| ||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  103 bits (52), Expect = 3e-19
 Identities = 112/130 (86%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 143  tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
            |||||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 203  ggcattttggtcggggcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 259
            ||||    |||||| ||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 260  acctcctcct 269
             |||||||||
Sbjct: 1443 ccctcctcct 1434
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 1e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 143 tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
           |||||||||| | ||||||||||||||||||||| |||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 203 ggcattttggtcggggcaaccttccggcacgggca 237
           ||||    ||||||| |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                           
Query: 143     tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
               |||||| ||||||||||||||| ||| ||||| | || | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 203     ggcattttggtcggggcaaccttccggcacgggca 237
               ||||    |||||| ||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                         
Query: 143   tgcttaaaaggtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttctt 202
             |||||| ||||||||||||||| ||| ||||| | || | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 203   ggcattttggtcggggcaaccttccggcacgggca 237
             ||||    |||||| ||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| |||||| |||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 213  tcggggcaaccttc 226
            ||||  ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| |||||| |||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 213  tcggggcaaccttc 226
            ||||  ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| |||||| |||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 213  tcggggcaaccttc 226
            ||||  ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                        
Query: 153  gtgtaaaggcagctgccgtcgtcgttccttgccgttgggtcgtagttcttggcattttgg 212
            ||||| ||||||||||| |||||| |||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 213  tcggggcaaccttc 226
            ||||  ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
to top
>gb|AC132122.2| Mus musculus chromosome 7 clone RP24-78F23, complete sequence
          Length = 203549

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 204   gcattttggtcggggcaacctt 225
             ||||||||||||||||||||||
Sbjct: 34322 gcattttggtcggggcaacctt 34343
to top
>gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosome 7, complete sequence
          Length = 161973

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 204    gcattttggtcggggcaacctt 225
              ||||||||||||||||||||||
Sbjct: 112430 gcattttggtcggggcaacctt 112451
to top
>gb|AC092713.2| Homo sapiens chromosome 17, clone CTC-780D20, complete sequence
          Length = 142087

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 119   aaacatcaaatattaaaagtgg 140
             ||||||||||||||||||||||
Sbjct: 20311 aaacatcaaatattaaaagtgg 20332
to top
>gb|AC026955.10|AC026955 Homo sapiens chromosome 17, clone RP11-585D22, complete sequence
          Length = 176258

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 119    aaacatcaaatattaaaagtgg 140
              ||||||||||||||||||||||
Sbjct: 110985 aaacatcaaatattaaaagtgg 111006
to top
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 48    aatatatttagagatatattaa 69
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963
to top
>ref|XM_463688.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 897

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 159 aggcagctgccgtcgtcgttc 179
           |||||||||||||||||||||
Sbjct: 403 aggcagctgccgtcgtcgttc 423
to top
>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 109370 aatgataagtaggtgtattgg 109390
to top
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 50    tatatttagagatatattaac 70
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335
to top
>gb|AC119034.2| Homo sapiens 3 BAC RP11-303O22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 173651

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 39     ggtaaactcaatatatttaga 59
              |||||||||||||||||||||
Sbjct: 157466 ggtaaactcaatatatttaga 157446
to top
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    tatatttagagatatattaac 70
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367
to top
>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 149522 aatgataagtaggtgtattgg 149502
to top
>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 5      aatgataagtaggtgtattgg 25
              |||||||||||||||||||||
Sbjct: 131097 aatgataagtaggtgtattgg 131077
to top
>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 5    aatgataagtaggtgtattgg 25
            |||||||||||||||||||||
Sbjct: 2351 aatgataagtaggtgtattgg 2331
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 159      aggcagctgccgtcgtcgttc 179
                |||||||||||||||||||||
Sbjct: 40657851 aggcagctgccgtcgtcgttc 40657871
to top
>dbj|AP004332.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBa0093F16
          Length = 160925

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 159   aggcagctgccgtcgtcgttc 179
             |||||||||||||||||||||
Sbjct: 99829 aggcagctgccgtcgtcgttc 99849
to top
>emb|AL133299.4|CNS01DUN Human chromosome 14 DNA sequence BAC R-62H20 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164935

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   taaactcaatatatttagaga 61
            |||||||||||||||||||||
Sbjct: 9870 taaactcaatatatttagaga 9890
to top
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 50   tatatttagagatatattaac 70
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197
to top
>emb|AL139194.7|CNS01DXB Human chromosome 14 DNA sequence BAC C-2190G12 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157120

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 41     taaactcaatatatttagaga 61
              |||||||||||||||||||||
Sbjct: 136081 taaactcaatatatttagaga 136101
to top
>dbj|AP003262.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0482D04
          Length = 144583

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 159    aggcagctgccgtcgtcgttc 179
              |||||||||||||||||||||
Sbjct: 137866 aggcagctgccgtcgtcgttc 137886
to top
>ref|XM_631241.1| Dictyostelium discoideum hypothetical protein (DDB0188303), partial
            mRNA
          Length = 1899

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  taaaacatcaaatattaaaa 136
            ||||||||||||||||||||
Sbjct: 1155 taaaacatcaaatattaaaa 1136
to top
>gb|AC185247.2| Pan troglodytes BAC clone CH251-7D5 from chromosome 15, complete
             sequence
          Length = 175295

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 91350 tcaaatattaaaagtggcat 91369
to top
>gb|AC099863.14| Mus musculus chromosome 3, clone RP23-6F2, complete sequence
          Length = 245784

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 119   aaacatcaaatattaaaagt 138
             ||||||||||||||||||||
Sbjct: 12977 aaacatcaaatattaaaagt 12996
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>emb|CR954197.2| Medicago truncatula chromosome 5 clone mte1-80m7, COMPLETE SEQUENCE
          Length = 138067

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   gtaggtaaaacatcaaatat 131
             ||||||||||||||||||||
Sbjct: 39456 gtaggtaaaacatcaaatat 39437
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>gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, complete sequence
          Length = 168763

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 86764 tcaaatattaaaagtggcat 86745
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>emb|AL954185.6| Human DNA sequence from clone RP11-282E4 on chromosome 9 Contains a
             pseudogene similar to part of a novel zinc finger protein,
             complete sequence
          Length = 24678

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 17721 tcaaatattaaaagtggcat 17740
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>emb|AL359955.25| Human DNA sequence from clone RP11-460N11 on chromosome 9 Contains a
              pseudogene similar to part of BMS1-like, ribosome assembly
              protein (yeast) (BMS1L) a immunoglobulin kappa variable 1-5
              (IGKV1-5) pseudogene, three novel pseudogenes, a zinc
              finger pseudogene, a pseudogene similar to tripartite
              motif-containing protein and two CpG islands, complete
              sequence
          Length = 165474

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 163501 tcaaatattaaaagtggcat 163520
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>emb|AL359510.24| Human DNA sequence from clone RP11-520H14 on chromosome 1 Contains a
            ribosomal protein S28 (RPS28) processed pseudogene, the
            GUK1 gene for guanylate kinase 1 protein, the GJA12 gene
            for gap junction alpha 12 47kDa protein, three novel
            proteins, the 5' end of the OBSCN gene for obscurin,
            cytoskeletal calmodulin and titin-interacting RhoGEF
            protein and four CpG islands, complete sequence
          Length = 95745

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 40   gtaaactcaatatatttagagata 63
            |||||||||| |||||||||||||
Sbjct: 2729 gtaaactcaacatatttagagata 2752
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>emb|AL138715.11| Human DNA sequence from clone RP11-77P19 on chromosome 13 Contains a
            novel zinc finger protein pseudogene, a novel gene, the
            5' end of a novel gene and a CpG island, complete
            sequence
          Length = 161183

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 124  tcaaatattaaaagtggcat 143
            ||||||||||||||||||||
Sbjct: 3561 tcaaatattaaaagtggcat 3542
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>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    aatatatttagagatatatt 67
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473
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>gb|AC162794.4| Mus musculus chromosome 3, clone RP24-120B22, complete sequence
          Length = 139773

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 119   aaacatcaaatattaaaagt 138
             ||||||||||||||||||||
Sbjct: 65394 aaacatcaaatattaaaagt 65375
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>emb|BX001034.6| Human DNA sequence from clone RP11-21H4 on chromosome 9 Contains a novel
              pseudogene and a novel zinc finger pseudogene, complete
              sequence
          Length = 173100

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 136914 tcaaatattaaaagtggcat 136895
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>gb|AC183272.3| Pan troglodytes BAC clone CH251-396D11 from chromosome 18, complete
             sequence
          Length = 146035

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 74090 tcaaatattaaaagtggcat 74071
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>gb|AC125634.1| Homo sapiens 3 BAC RP11-512E23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162478

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 16857 tcaaatattaaaagtggcat 16876
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>gb|AC182642.2| Pan troglodytes BAC clone CH251-216C21 from chromosome 21, complete
              sequence
          Length = 187371

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 116740 tcaaatattaaaagtggcat 116721
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>dbj|AK094778.1| Homo sapiens cDNA FLJ37459 fis, clone BRAWH2011204
          Length = 2248

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 40  gtaaactcaatatatttagagata 63
           |||||||||| |||||||||||||
Sbjct: 135 gtaaactcaacatatttagagata 158
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>gb|AC125393.6| Pan troglodytes clone rp43-22m15, complete sequence
          Length = 187256

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 49313 tcaaatattaaaagtggcat 49332
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>gb|AC108695.2| Homo sapiens 3 BAC RP11-744C8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 190845

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gtaaaacatcaaatattaaa 135
             ||||||||||||||||||||
Sbjct: 53075 gtaaaacatcaaatattaaa 53056
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    aaacatgcccagcaatcgcttgga 95
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
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>gb|AC182470.3| Pan troglodytes BAC clone CH251-440F19 from chromosome 2, complete
              sequence
          Length = 163061

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 128672 tcaaatattaaaagtggcat 128653
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>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   tggcatgcttaaaaggtgta 157
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
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>gb|AC092854.14| Homo sapiens chromosome 22 clone rp11-39n6 map 22q11, complete sequence
          Length = 163955

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 57162 tcaaatattaaaagtggcat 57143
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>gb|AC098826.4| Homo sapiens BAC clone RP11-629P16 from 2, complete sequence
          Length = 120117

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 124   tcaaatattaaaagtggcat 143
             ||||||||||||||||||||
Sbjct: 44719 tcaaatattaaaagtggcat 44738
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>gb|AC108715.2| Homo sapiens 3 BAC RP11-184F3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176462

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   gtaaaacatcaaatattaaa 135
             ||||||||||||||||||||
Sbjct: 66250 gtaaaacatcaaatattaaa 66269
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>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 244 cttgctgtgctcctttacctcctc 267
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
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>gb|AC004756.1|AC004756 Homo sapiens chromosome 17, clone hCIT.508_D_18, complete sequence
          Length = 71734

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   taaaacatcaaatattaaaa 136
             ||||||||||||||||||||
Sbjct: 42239 taaaacatcaaatattaaaa 42258
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>emb|AL445643.12| Human DNA sequence from clone RP11-350D23 on chromosome 9, complete
              sequence
          Length = 188693

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 116237 tcaaatattaaaagtggcat 116256
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>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    aatatatttagagatatatt 67
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485
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>emb|AJ972910.2| Brachidontes pharaonis partial mdr1 gene for putative multidrug
            resistance protein 1, exons 1-7
          Length = 7861

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  gtaaaacatcaaatattaaa 135
            ||||||||||||||||||||
Sbjct: 1966 gtaaaacatcaaatattaaa 1947
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>emb|BX000449.4| Human DNA sequence from clone RP11-287N12 on chromosome 9, complete
              sequence
          Length = 164006

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcaaatattaaaagtggcat 143
              ||||||||||||||||||||
Sbjct: 161986 tcaaatattaaaagtggcat 161967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,498,728
Number of Sequences: 3902068
Number of extensions: 2498728
Number of successful extensions: 51131
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50935
Number of HSP's gapped (non-prelim): 168
length of query: 272
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 250
effective length of database: 17,147,199,772
effective search space: 4286799943000
effective search space used: 4286799943000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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