ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|Z92793.1|CEH15M21 Caenorhabditis elegans Fosmid H15M21, comp... 40 1.2
2emb|BX511023.8| Zebrafish DNA sequence from clone DKEY-148A12 in... 40 1.2
3ref|NM_059710.3| Caenorhabditis elegans Deacetylase Complex Prot... 40 1.2
4ref|NM_182031.2| Caenorhabditis elegans Deacetylase Complex Prot... 40 1.2
5emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in ... 38 4.8
6emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 ... 38 4.8
7gb|AY267893.1| Blepharida sp. JXB-2003d mitochondrial cytochrome... 38 4.8
8gb|AY267888.1| Blepharida hinchahuevosi mitochondrial cytochrome... 38 4.8
9emb|BX936428.10| Zebrafish DNA sequence from clone RP71-19F19 in... 38 4.8
10gb|AC010748.5| Homo sapiens BAC clone CTD-2532L16 from 16, compl... 38 4.8
11emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in ... 38 4.8
12gb|AC006349.3|AC006349 Homo sapiens PAC clone RP5-892G5 from 14q... 38 4.8
13emb|AL929237.17| Zebrafish DNA sequence from clone CH211-213I16 ... 38 4.8
14emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro... 38 4.8

>emb|Z92793.1|CEH15M21 Caenorhabditis elegans Fosmid H15M21, complete sequence
          Length = 12076

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 54   aatccagtcaaaactcaagt 73
            ||||||||||||||||||||
Sbjct: 3406 aatccagtcaaaactcaagt 3425



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>emb|BX511023.8| Zebrafish DNA sequence from clone DKEY-148A12 in linkage group 2,
              complete sequence
          Length = 244788

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     ttcataatgttacaggggtt 92
              ||||||||||||||||||||
Sbjct: 239755 ttcataatgttacaggggtt 239774



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>ref|NM_059710.3| Caenorhabditis elegans Deacetylase Complex Protein family member
           (dcp-66) (dcp-66) mRNA, complete cds
          Length = 2192

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  aatccagtcaaaactcaagt 73
           ||||||||||||||||||||
Sbjct: 116 aatccagtcaaaactcaagt 97



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>ref|NM_182031.2| Caenorhabditis elegans Deacetylase Complex Protein family member
           (dcp-66) (dcp-66) mRNA, complete cds
          Length = 2201

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 54  aatccagtcaaaactcaagt 73
           ||||||||||||||||||||
Sbjct: 116 aatccagtcaaaactcaagt 97



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>emb|CR848674.8| Zebrafish DNA sequence from clone DKEY-73G17 in linkage group 16,
             complete sequence
          Length = 149652

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    tcaagttcataatgttaca 86
             |||||||||||||||||||
Sbjct: 95302 tcaagttcataatgttaca 95284



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>emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 in linkage group 16,
             complete sequence
          Length = 153848

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 68    tcaagttcataatgttaca 86
             |||||||||||||||||||
Sbjct: 21225 tcaagttcataatgttaca 21207



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>gb|AY267893.1| Blepharida sp. JXB-2003d mitochondrial cytochrome oxidase subunit I
           (COI) and cytochrome oxidase subunit II (COII) genes,
           partial sequence
          Length = 1128

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 70  aagttcataatgttacagg 88
           |||||||||||||||||||
Sbjct: 889 aagttcataatgttacagg 907



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>gb|AY267888.1| Blepharida hinchahuevosi mitochondrial cytochrome oxidase subunit I
            (COI) and cytochrome oxidase subunit II (COII) genes,
            partial sequence
          Length = 1414

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 70   aagttcataatgttacagg 88
            |||||||||||||||||||
Sbjct: 1127 aagttcataatgttacagg 1145



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>emb|BX936428.10| Zebrafish DNA sequence from clone RP71-19F19 in linkage group 5, complete
              sequence
          Length = 188618

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 50     ttcaaatccagtcaaaact 68
              |||||||||||||||||||
Sbjct: 115462 ttcaaatccagtcaaaact 115444



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>gb|AC010748.5| Homo sapiens BAC clone CTD-2532L16 from 16, complete sequence
          Length = 145459

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 49    cttcaaatccagtcaaaac 67
             |||||||||||||||||||
Sbjct: 42586 cttcaaatccagtcaaaac 42568



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>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete
              sequence
          Length = 197352

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 50     ttcaaatccagtcaaaact 68
              |||||||||||||||||||
Sbjct: 139987 ttcaaatccagtcaaaact 140005



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>gb|AC006349.3|AC006349 Homo sapiens PAC clone RP5-892G5 from 14q24.3, complete sequence
          Length = 111937

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 59     agtcaaaactcaagttcataatg 81
              ||||||||||||||| |||||||
Sbjct: 100180 agtcaaaactcaagtgcataatg 100202



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>emb|AL929237.17| Zebrafish DNA sequence from clone CH211-213I16 in linkage group 20,
            complete sequence
          Length = 205393

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 60   gtcaaaactcaagttcata 78
            |||||||||||||||||||
Sbjct: 6543 gtcaaaactcaagttcata 6525



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>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
              sequence
          Length = 142846

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 48     gcttcaaatccagtcaaaa 66
              |||||||||||||||||||
Sbjct: 118652 gcttcaaatccagtcaaaa 118670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 989,607
Number of Sequences: 3902068
Number of extensions: 989607
Number of successful extensions: 125981
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125951
Number of HSP's gapped (non-prelim): 30
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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