ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 32 0.57
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 32 0.57
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 30 1.7
4RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC smal... 28 8.3

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 17/31 (54%), Positives = 17/31 (54%)
 Frame = -3

Query: 239  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 147
            PSYRRHL              DIPLVSVYFR
Sbjct: 1021 PSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 17/31 (54%), Positives = 17/31 (54%)
 Frame = -3

Query: 239  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 147
            PSYRRHL              DIPLVSVYFR
Sbjct: 1021 PSYRRHLDVVVACEDDDDNDVDIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/31 (51%), Positives = 16/31 (51%)
 Frame = -3

Query: 239  PSYRRHLXXXXXXXXXXXXXXDIPLVSVYFR 147
            P YRRHL              DIPLVSVYFR
Sbjct: 1023 PEYRRHLDIGVACEDEDENDVDIPLVSVYFR 1053



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>RFCS_PYRAB (Q9V2G4) Replication factor C small subunit (RFC small subunit)|
           (Clamp loader small subunit) (PabRFC small subunit)
           [Contains: Pab RFC-1 intein; Pab RFC-2 intein]
          Length = 1437

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 25  FKPQLSLQYNNNYYCIKELKHYLRSGKMGH 114
           ++PQ   +     + +K LKHY+++G M H
Sbjct: 21  YRPQKLEEIVGQEHIVKRLKHYVKTGSMPH 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,181,604
Number of Sequences: 219361
Number of extensions: 433233
Number of successful extensions: 1121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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