ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaet75c05 |
|---|---|
| Clone Library Name | barley_pub |
>RXRG_CHICK (P28701) Retinoic acid receptor RXR-gamma (Retinoid X receptor| gamma) Length = 467 Score = 34.3 bits (77), Expect = 0.084 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = -2 Query: 163 PACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 P+ PG LA H+ C DRS G +G +C G Sbjct: 131 PSTSPGSLAKHICAICGDRSSGKHYGVYSCEG 162
>RXRG_MOUSE (P28705) Retinoic acid receptor RXR-gamma (Retinoid X receptor| gamma) Length = 463 Score = 32.7 bits (73), Expect = 0.24 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 163 PACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 P+ PG L H+ C DRS G +G +C G Sbjct: 127 PSTSPGSLVKHICAICGDRSSGKHYGVYSCEG 158
>RXRG_HUMAN (P48443) Retinoic acid receptor RXR-gamma (Retinoid X receptor| gamma) Length = 463 Score = 32.7 bits (73), Expect = 0.24 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 163 PACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 P+ PG L H+ C DRS G +G +C G Sbjct: 127 PSTSPGSLVKHICAICGDRSSGKHYGVYSCEG 158
>RXRA_BRARE (Q90416) Retinoic acid receptor RXR-alpha (Retinoid X receptor| alpha) Length = 441 Score = 32.0 bits (71), Expect = 0.42 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -2 Query: 163 PACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 P PG L+ H+ C DRS G +G +C G Sbjct: 105 PCGSPGSLSKHICAICGDRSSGKHYGVYSCEG 136
>MLC1_HUMAN (Q15049) Membrane protein MLC1| Length = 376 Score = 31.2 bits (69), Expect = 0.71 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 172 WLLPACMPGFLATHVAHFCPDR 107 W+L AC P +A+HVA CP + Sbjct: 233 WILVACFPSAIASHVAAECPSK 254
>RXRG_XENLA (P51129) Retinoic acid receptor RXR-gamma (Retinoid X receptor| gamma) Length = 470 Score = 30.4 bits (67), Expect = 1.2 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 151 PGFLATHVAHFCPDRSVGSPFGPGACSG 68 PG L H+ C DRS G +G +C G Sbjct: 138 PGALTKHICAICGDRSSGKHYGVYSCEG 165
>MLC1_MACFA (Q60HE7) Membrane protein MLC1| Length = 376 Score = 29.6 bits (65), Expect = 2.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 172 WLLPACMPGFLATHVAHFCPDR 107 W+L AC P +A+HV CP + Sbjct: 233 WILVACFPSAIASHVTAECPSK 254
>MLC1_MOUSE (Q8VHK5) Membrane protein MLC1| Length = 382 Score = 29.6 bits (65), Expect = 2.1 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2 Query: 172 WLLPACMPGFLATHVAHFCPDR 107 W+L AC P +A+HV CP + Sbjct: 240 WILVACFPSAIASHVTAECPSK 261
>RS6_PSEF5 (Q4KJ62) 30S ribosomal protein S6| Length = 141 Score = 28.9 bits (63), Expect = 3.5 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 18 LLKSH*KYSTTRPRRKRPLHAPGPNGDPTDRS 113 +LK+ S R RR RP HA +GD +D S Sbjct: 102 MLKAEENRSERRERRDRPEHADSADGDDSDNS 133
>SC6A8_RABIT (P31661) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 39 YSTTRPRRKRPLHAPGPNGDPTDRSG 116 YS + +K PL APGP+G P G Sbjct: 11 YSVSGDEKKGPLIAPGPDGAPAKGDG 36
>SC6A8_HUMAN (P48029) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 39 YSTTRPRRKRPLHAPGPNGDPTDRSG 116 YS + +K PL APGP+G P G Sbjct: 11 YSVSGDEKKGPLIAPGPDGAPAKGDG 36
>SC6A8_BOVIN (O18875) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 28.1 bits (61), Expect = 6.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 39 YSTTRPRRKRPLHAPGPNGDPTDRSG 116 YS + +K PL APGP+G P G Sbjct: 11 YSVSGEEKKGPLIAPGPDGAPAKGDG 36
>RNPA_SYMTH (Q67J29) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP| protein) (RNase P protein) (Protein C5) Length = 115 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%) Frame = +2 Query: 83 GTKRRPDRSIGAKMSD-MCR*KARHASRQ--QPLWPRINQGYYPV 208 GT R + G K+ + R +A+ R+ + LWPR+ QGYY V Sbjct: 38 GTPTRVGFAAGRKLGKAVVRNRAKRRLREAVRLLWPRVRQGYYIV 82
>PHLB2_HUMAN (Q86SQ0) Pleckstrin homology-like domain family B member 2 (Protein| LL5-beta) Length = 1253 Score = 28.1 bits (61), Expect = 6.0 Identities = 9/27 (33%), Positives = 14/27 (51%) Frame = -1 Query: 161 CLHAGLFSDTCRSFLPRSIGRVAVWSR 81 C H + TCR FL + G++ W + Sbjct: 1136 CYHVSITEKTCRGFLIKMGGKIKTWKK 1162
>TCRG1_MOUSE (Q8CGF7) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) (p144) (Formin-binding protein 28) (FBP 28) Length = 1100 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = -2 Query: 247 TPTIPMSVPR*LANGIITLINPWPQWLLPACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 TPT+ +S P A + T+ P PQ L PA V H P + P P Sbjct: 316 TPTVSVSAPAPTATPVQTVPQPHPQTLPPA---------VPHSVPQPAAAIPAFPPVMVP 366 Query: 67 RFR 59 FR Sbjct: 367 PFR 369
>PHLB1_HUMAN (Q86UU1) Pleckstrin homology-like domain family B member 1 (Protein| LL5-alpha) Length = 1377 Score = 27.7 bits (60), Expect = 7.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -1 Query: 161 CLHAGLFSDTCRSFLPRSIGRVAVWSR 81 CLH L S CR +L + G++ W + Sbjct: 1249 CLHVVLSSKVCRGYLVKMGGKIKSWKK 1275
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/63 (31%), Positives = 25/63 (39%) Frame = -2 Query: 247 TPTIPMSVPR*LANGIITLINPWPQWLLPACMPGFLATHVAHFCPDRSVGSPFGPGACSG 68 TPT+ +S P A + T+ P PQ L PA V H P + P P Sbjct: 314 TPTVSVSTPARTATPVQTVPQPHPQTLPPA---------VPHSVPQPTTAIPAFPPVMVP 364 Query: 67 RFR 59 FR Sbjct: 365 PFR 367 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,032,660 Number of Sequences: 219361 Number of extensions: 893806 Number of successful extensions: 2173 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2172 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
