>gb|AF542972.1| Triticum aestivum SC34 tumor suppressor-like mRNA, complete
           sequence
          Length = 836

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 49/55 (89%)
 Strand = Plus / Minus

                                                                  
Query: 236 agcagcttagcattgactccatcaggcaagaccctgccctcactcttgaacttga 290
           ||||||||||||||||| |||||||||| ||  || |||||||||||| ||||||
Sbjct: 653 agcagcttagcattgacaccatcaggcacgattcttccctcactcttgtacttga 599

>emb|X81691.1|OSSC34MR O.sativa SC34 mRNA for tumor suppressor
          Length = 971

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 53/61 (86%)
 Strand = Plus / Minus

                                                                       
Query: 200 ccaggggcacggttcgcaaggcggccatggcatccgagcagcttagcattgactccatca 259
           ||||||||||| |||||||| || |||||  | || ||||||||||||||||| ||||||
Sbjct: 679 ccaggggcacgcttcgcaagacgaccatgagaaccaagcagcttagcattgacaccatca 620

            
Query: 260 g 260
           |
Sbjct: 619 g 619

>dbj|AK120033.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-188-A02, full
           insert sequence
          Length = 906

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 218 aggcggccatggcatccgagcagcttagcattgactccatcaggca 263
           ||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 676 aggcgaccatggcaaccaagtagcttagcattgacaccatcaggca 631

>emb|X64621.1|OSR22CDNA O.sativa R22 mRNA
          Length = 629

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 218 aggcggccatggcatccgagcagcttagcattgactccatcaggca 263
           ||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 389 aggcgaccatggcaaccaagtagcttagcattgacaccatcaggca 344

>dbj|AK066128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052E20, full
           insert sequence
          Length = 910

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 218 aggcggccatggcatccgagcagcttagcattgactccatcaggca 263
           ||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 680 aggcgaccatggcaaccaagtagcttagcattgacaccatcaggca 635

>dbj|AK062208.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H08, full
           insert sequence
          Length = 555

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                         
Query: 218 aggcggccatggcatccgagcagcttagcattgactccatcaggca 263
           ||||| |||||||| || || |||||||||||||| ||||||||||
Sbjct: 325 aggcgaccatggcaaccaagtagcttagcattgacaccatcaggca 280

>gb|AF180758.1|AF180758 Vitis riparia 60S ribosomal protein L10 (QM) mRNA, complete cds
          Length = 980

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 224 ccatggcatccgagcagcttagcattgactccatcagg 261
           |||||||||||||| ||||| |||||||| ||||||||
Sbjct: 644 ccatggcatccgagaagcttggcattgacaccatcagg 607

>dbj|AK103710.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136P16, full
           insert sequence
          Length = 973

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 200 ccaggggcacggttcgcaaggcggccatggcatccgagcagcttagcattgactccatca 259
           ||||||||||| |||||||| || |||||  | || ||||||| ||||||||| ||||||
Sbjct: 695 ccaggggcacgcttcgcaagacgaccatgagaaccaagcagctgagcattgacaccatca 636

            
Query: 260 g 260
           |
Sbjct: 635 g 635

>dbj|AK102971.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033115J23, full
           insert sequence
          Length = 995

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 200 ccaggggcacggttcgcaaggcggccatggcatccgagcagcttagcattgactccatca 259
           ||||||||||| |||||||| || |||||  | || ||||||| ||||||||| ||||||
Sbjct: 695 ccaggggcacgcttcgcaagacgaccatgagaaccaagcagctgagcattgacaccatca 636

            
Query: 260 g 260
           |
Sbjct: 635 g 635

>dbj|AK060902.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-D11, full
           insert sequence
          Length = 1034

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 200 ccaggggcacggttcgcaaggcggccatggcatccgagcagcttagcattgactccatca 259
           ||||||||||| |||||||| || |||||  | || ||||||| ||||||||| ||||||
Sbjct: 701 ccaggggcacgcttcgcaagacgaccatgagaaccaagcagctgagcattgacaccatca 642

            
Query: 260 g 260
           |
Sbjct: 641 g 641

>gb|U55212.1|OSU55212 Oryza sativa Wilms' tumor-related protein QM mRNA, partial cds
          Length = 747

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 200 ccaggggcacggttcgcaaggcggccatggcatccgagcagcttagcattgactccatca 259
           ||||||||||| |||||||| || |||||  | || ||||||| ||||||||| ||||||
Sbjct: 483 ccaggggcacgcttcgcaagacgaccatgagaaccaagcagctgagcattgacaccatca 424

            
Query: 260 g 260
           |
Sbjct: 423 g 423

>gb|AC126264.3| Mus musculus BAC clone RP23-376F13 from chromosome 14, complete
             sequence
          Length = 169909

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 43    aaaatagataatatcttccataacaa 68
             ||||||||||| ||||||||||||||
Sbjct: 62720 aaaatagataacatcttccataacaa 62745

>gb|AY794382.1| Valeriana sorbifolia trnK gene, intron; chloroplast
          Length = 959

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  ccattccaaaatagataatat 56
           |||||||||||||||||||||
Sbjct: 432 ccattccaaaatagataatat 412

>gb|AY794360.1| Valeriana nivalis trnK gene, intron; chloroplast
          Length = 1044

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 36  ccattccaaaatagataatat 56
           |||||||||||||||||||||
Sbjct: 445 ccattccaaaatagataatat 425

>ref|XM_597663.2| PREDICTED: Bos taurus similar to Ca2+-dependent activator for
            secretion protein 2 (LOC519444), mRNA
          Length = 2606

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 31   cagtaccattccaaaatagat 51
            |||||||||||||||||||||
Sbjct: 1249 cagtaccattccaaaatagat 1269

>emb|AL159163.40| Human DNA sequence from clone RP11-514O12 on chromosome 6 Contains the 5'
              end of a variant of the RPS6KA2 gene for ribosomal protein
              S6 kinase, 90kD, polypeptide 2 (RSK3), a novel gene, the 3'
              end of the gene for ribonuclease 6 precursor
              (RNASE6PL)(FLJ10907) and 2 CpG islands, complete sequence
          Length = 156938

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 22     cattcatatcagtaccattcc 42
              |||||||||||||||||||||
Sbjct: 139673 cattcatatcagtaccattcc 139653

>gb|AC155233.2| Mus musculus BAC clone RP24-381F23 from 12, complete sequence
          Length = 149905

 Score = 42.1 bits (21), Expect = 0.98
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 234   cgagcagcttagcattgactc 254
             |||||||||||||||||||||
Sbjct: 77115 cgagcagcttagcattgactc 77095

>gb|BT016528.1| Zea mays clone Contig361 mRNA sequence
          Length = 814

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccgagcagcttagcattgactccatcaggcaagaccctgccctcactcttgaacttgagg 292
           ||||||||||| || ||||| |||||||| |  |  |||||||| |||||| |||| |||
Sbjct: 586 ccgagcagctttgcgttgacaccatcaggaacaattctgccctcgctcttgtacttcagg 527

               
Query: 293 tagt 296
           ||||
Sbjct: 526 tagt 523

>gb|BT016423.1| Zea mays clone Contig256 mRNA sequence
          Length = 959

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccgagcagcttagcattgactccatcaggcaagaccctgccctcactcttgaacttgagg 292
           ||||||||||| || ||||| |||||||| |  |  || |||||||||||| |||| |||
Sbjct: 656 ccgagcagctttgcgttgacaccatcaggaacaattctaccctcactcttgtacttcagg 597

               
Query: 293 tagt 296
           ||||
Sbjct: 596 tagt 593

>gb|AE017129.1| Yersinia pestis biovar Medievalis str. 91001 section 3 of 16 of the
             complete genome
          Length = 290002

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 207   cacggttcgcaaggcggccatggc 230
             |||| |||||||||||||||||||
Sbjct: 53639 cacgtttcgcaaggcggccatggc 53616

>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    cacggttcgcaaggcggccatggc 230
              |||| |||||||||||||||||||
Sbjct: 779396 cacgtttcgcaaggcggccatggc 779373

>gb|AC006372.2| Homo sapiens BAC clone RP11-331D5 from 7, complete sequence
          Length = 190846

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 261  gcaagaccctgccctcactc 280
            ||||||||||||||||||||
Sbjct: 9943 gcaagaccctgccctcactc 9924

>gb|AC006353.3| Homo sapiens PAC clone RP5-1062J16 from 7, complete sequence
          Length = 158090

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 134   ggtaaaataaggattgatagaact 157
             |||||||||| |||||||||||||
Sbjct: 92287 ggtaaaataatgattgatagaact 92310

>ref|XM_499758.1| Yarrowia lipolytica CLIB122, YALI0A04631g predicted mRNA
          Length = 1404

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 58 ttccataacaaggttcgaca 77
          ||||||||||||||||||||
Sbjct: 9  ttccataacaaggttcgaca 28

>emb|AL357117.20| Human DNA sequence from clone RP11-436I24 on chromosome 6 Contains part
             of the gene for a novel protein (contains KIAA0680), a
             novel gene and a CpG island, complete sequence
          Length = 139627

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   gcaagaccctgccctcactc 280
             ||||||||||||||||||||
Sbjct: 51995 gcaagaccctgccctcactc 51976

>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 207    cacggttcgcaaggcggccatggc 230
              |||| |||||||||||||||||||
Sbjct: 571321 cacgtttcgcaaggcggccatggc 571298

>emb|AJ414157.1| Yersinia pestis strain CO92 complete genome; segment 17/20
          Length = 216050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   cacggttcgcaaggcggccatggc 230
             |||| |||||||||||||||||||
Sbjct: 99370 cacgtttcgcaaggcggccatggc 99393

>emb|AL672199.16| Mouse DNA sequence from clone RP23-171O21 on chromosome 11 Contains the
              Srcasm gene for Src activating and signaling molecule and
              the 3' end of a novel gene, complete sequence
          Length = 150260

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     tcgacacaacattcagacaaaata 95
              ||||||||||||||| ||||||||
Sbjct: 130462 tcgacacaacattcaaacaaaata 130485

>gb|AF480632.1| HIV-1 isolate VT22 from Brazil envelope glycoprotein (env) gene,
           partial cds
          Length = 501

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 25  tcatatcagtaccattccaa 44
           ||||||||||||||||||||
Sbjct: 424 tcatatcagtaccattccaa 405

>gb|AC097522.4| Homo sapiens BAC clone RP11-588F10 from 4, complete sequence
          Length = 207883

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 258  caggcaagaccctgccctca 277
            ||||||||||||||||||||
Sbjct: 2646 caggcaagaccctgccctca 2665

>gb|AY103671.1| Zea mays PCO135454 mRNA sequence
          Length = 1044

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 53/64 (82%)
 Strand = Plus / Minus

                                                                       
Query: 233 ccgagcagcttagcattgactccatcaggcaagaccctgccctcactcttgaacttgagg 292
           ||||||||||| || ||||| |||||||| |  |  || |||||||||||| |||| |||
Sbjct: 700 ccgagcagctttgcgttgacaccatcaggaacaattctaccctcactcttgtacttcagg 641

               
Query: 293 tagt 296
           ||||
Sbjct: 640 tagt 637

>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     ttccataacaaggttcgaca 77
              ||||||||||||||||||||
Sbjct: 492668 ttccataacaaggttcgaca 492649


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,353,973
Number of Sequences: 3902068
Number of extensions: 2353973
Number of successful extensions: 44829
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 44761
Number of HSP's gapped (non-prelim): 69
length of query: 296
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 274
effective length of database: 17,147,199,772
effective search space: 4698332737528
effective search space used: 4698332737528
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)