>emb|X15869.1|HVNADPHP Barley mRNA for NADPH-protochlorophyllide oxidoreductase (PCR)
          Length = 1490

 Score =  414 bits (209), Expect = e-113
 Identities = 232/242 (95%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1488 catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 1429

                                                                        
Query: 61   cacacgagatctatgcactctcgcggccactcgcagggcctctcctgcgtaattgagctt 120
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1428 cacacgagatctatgcactctcgcggccactcgcaaggcctctcctgcgtaattgagctt 1369

                                                                        
Query: 121  ctaaaaaggcgtaaacatgataattaccaaataagtttnnnnnnncgacaagttgagcat 180
            ||||||||||||||||||||||||||||||||||||||       |||||||||||||||
Sbjct: 1368 ctaaaaaggcgtaaacatgataattaccaaataagtttaaaaaaacgacaagttgagcat 1309

                                                                        
Query: 181  cggccggcgtcctaaatgcatgcatgcatccatgggatttgcgggggatcatgcgagtcc 240
            |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1308 cggccggcgtcctagatgcatgcatgcatccatgggatttgcggtggatcatgcgagtcc 1249

              
Query: 241  ga 242
            ||
Sbjct: 1248 ga 1247

>emb|X76532.1|TAPWR5PI Triticum aestivium pWR5 RNA for protochlorophyilide reductase
          Length = 1484

 Score =  194 bits (98), Expect = 9e-47
 Identities = 138/150 (92%), Gaps = 1/150 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgtttgccgaaaattgtacatcttc 60
            ||||||||||||| |||||||||||||||||| |  ||| ||||||||||||||||||||
Sbjct: 1472 catcctcaatcagacctgcggttttattattc-atggttcgccgaaaattgtacatcttc 1414

                                                                        
Query: 61   cacacgagatctatgcactctcgcggccactcgcagggcctctcctgcgtaattgagctt 120
            ||||||||||||| |||||||||| | |||||||| ||||||||| ||||||||||| ||
Sbjct: 1413 cacacgagatctacgcactctcgccgacactcgcaaggcctctcccgcgtaattgagttt 1354

                                          
Query: 121  ctaaaaaggcgtaaacatgataattaccaa 150
            ||||||||||||||| ||||||||||||||
Sbjct: 1353 ctaaaaaggcgtaaaaatgataattaccaa 1324

>emb|X17067.1|ASPCR Avena sativa mRNA for protochlorophyllide reductase
          Length = 1146

 Score =  127 bits (64), Expect = 2e-26
 Identities = 89/96 (92%), Gaps = 1/96 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    catcctcaatcaggcctgcggttttattattccaatgttt-gccgaaaattgtacatctt 59
            |||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 1146 catcctcaattaggcctgcggttttattattccaatggttcgccgaaaattgtacatctt 1087

                                                
Query: 60   ccacacgagatctatgcactctcgcggccactcgca 95
            |||| ||||||||||| |||| ||||| ||||||||
Sbjct: 1086 ccacccgagatctatgtactcccgcggacactcgca 1051

>gb|AC104358.4| Homo sapiens chromosome 8, clone RP11-151L10, complete sequence
          Length = 174055

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 196    atgcatgcatgcatccatggga 217
              ||||||||||||||||||||||
Sbjct: 139457 atgcatgcatgcatccatggga 139436

>dbj|AP002089.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1100B9
          Length = 151959

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 196   atgcatgcatgcatccatggga 217
             ||||||||||||||||||||||
Sbjct: 53965 atgcatgcatgcatccatggga 53944

>dbj|AP005622.3| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1016F12, complete
              sequence
          Length = 200738

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 196    atgcatgcatgcatccatggga 217
              ||||||||||||||||||||||
Sbjct: 128594 atgcatgcatgcatccatggga 128573

>gb|AC130675.7| Mus musculus chromosome 8, clone RP23-167D18, complete sequence
          Length = 193579

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    aaacatgataattaccaaata 153
              |||||||||||||||||||||
Sbjct: 126070 aaacatgataattaccaaata 126050

>gb|AY733961.1| Macaca mulatta isolate rq2277-10p14 MLV-derived vector proviral
           integration site
          Length = 362

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 193 taaatgcatgcatgcatccat 213
           |||||||||||||||||||||
Sbjct: 266 taaatgcatgcatgcatccat 246

>gb|AC133169.3| Mus musculus BAC clone RP24-259I15 from 9, complete sequence
          Length = 163930

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 190    tcctaaatgcatgcatgcatccatg 214
              ||||||| |||||||||||||||||
Sbjct: 142851 tcctaaaagcatgcatgcatccatg 142827

>emb|AL845490.8| Mouse DNA sequence from clone RP23-259M16 on chromosome 2, complete
              sequence
          Length = 200794

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 190    tcctaaatgcatgcatgcatccatg 214
              |||||||||||||||||||| ||||
Sbjct: 118465 tcctaaatgcatgcatgcatgcatg 118489

>gb|BC079655.1| Mus musculus cDNA clone IMAGE:6854812
          Length = 4411

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 196  atgcatgcatgcatccatgg 215
            ||||||||||||||||||||
Sbjct: 1039 atgcatgcatgcatccatgg 1058

>ref|XM_617927.2| PREDICTED: Bos taurus similar to F-box only protein 28, transcript
            variant 1 (LOC537745), mRNA
          Length = 2928

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 195  aatgcatgcatgcatccatg 214
            ||||||||||||||||||||
Sbjct: 1809 aatgcatgcatgcatccatg 1790

>gb|AC124417.5| Mus musculus BAC clone RP24-313G11 from chromosome 18, complete
             sequence
          Length = 181811

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    aaattgtacatcttccacac 65
             ||||||||||||||||||||
Sbjct: 24311 aaattgtacatcttccacac 24292

>gb|AC125152.5| Mus musculus BAC clone RP24-366J2 from chromosome 14, complete sequence
          Length = 134122

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   aaatgcatgcatgcatccat 213
             ||||||||||||||||||||
Sbjct: 82801 aaatgcatgcatgcatccat 82782

>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence
          Length = 129504

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   aatgcatgcatgcatccatg 214
             ||||||||||||||||||||
Sbjct: 61533 aatgcatgcatgcatccatg 61552

>gb|AY789611.1| Chrysopogon fulvus voucher PI199241 USDA FL gene, partial cds
          Length = 947

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 191 cctaaatgcatgcatgcatccatg 214
           ||||||||||||||||||| ||||
Sbjct: 476 cctaaatgcatgcatgcatgcatg 499

>emb|AL928676.13| Zebrafish DNA sequence from clone DKEY-121K17, complete sequence
          Length = 176196

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     ttttattattccaatgtttg 41
              ||||||||||||||||||||
Sbjct: 105180 ttttattattccaatgtttg 105199

>emb|AL669956.10| Mouse DNA sequence from clone RP23-222I1 on chromosome X, complete
             sequence
          Length = 199434

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 196   atgcatgcatgcatccatgg 215
             ||||||||||||||||||||
Sbjct: 19812 atgcatgcatgcatccatgg 19793


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,664,469
Number of Sequences: 3902068
Number of extensions: 1664469
Number of successful extensions: 46808
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46756
Number of HSP's gapped (non-prelim): 44
length of query: 242
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 220
effective length of database: 17,147,199,772
effective search space: 3772383949840
effective search space used: 3772383949840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)