ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaet75b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome... 42 1.1
2gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosom... 42 1.1
3emb|AL353674.17| Human DNA sequence from clone RP11-162O6 on chr... 42 1.1
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.1
5gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell... 42 1.1
6gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell ... 42 1.1
7dbj|AK105210.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.1
8gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 42 1.1
9emb|BX284676.8| Mouse DNA sequence from clone RP23-258L18 on chr... 42 1.1
10ref|XM_416336.1| PREDICTED: Gallus gallus similar to KIAA1549 pr... 40 4.4
11ref|XM_761718.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 4.4
12gb|AY230433.1| Cochliobolus heterostrophus kinesin (KLP8) gene, ... 40 4.4
13ref|XM_778084.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 4.4
14emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 4.4
15gb|AC004024.4| Homo sapiens 12q24.2 PAC RP1-128M12 (Roswell Park... 40 4.4
16gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, comp... 40 4.4
17dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
18dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
19gb|AC105186.14| Homo sapiens chromosome 8, clone CTD-2323A1, com... 40 4.4
20dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.4
21gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.4
22emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb... 40 4.4

>gb|AC104708.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1174_H11,
             complete sequence
          Length = 102567

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 263   aagcctttgtcttgtcctgctttttagcctttttagtcttccaca 307
             |||| ||| ||||||||||||| |||||||||  || ||||||||
Sbjct: 18685 aagcatttatcttgtcctgcttcttagcctttccagacttccaca 18729



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>gb|AC124467.3| Mus musculus BAC clone RP24-163L18 from chromosome 15, complete
             sequence
          Length = 169366

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   tcagagtaacatcacagagag 139
             |||||||||||||||||||||
Sbjct: 88371 tcagagtaacatcacagagag 88391



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>emb|AL353674.17| Human DNA sequence from clone RP11-162O6 on chromosome 6, complete
              sequence
          Length = 169897

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 233    aagcatttgccttgtccttcttgct 257
              |||||||| ||||||||||||||||
Sbjct: 150338 aagcatttcccttgtccttcttgct 150314



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 263      aagcctttgtcttgtcctgctttttagcctttttagtcttccaca 307
                |||| ||| ||||||||||||| |||||||||  || ||||||||
Sbjct: 19558786 aagcatttatcttgtcctgcttcttagcctttccagacttccaca 19558830



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>gb|AC023743.4| Drosophila melanogaster X BAC RP98-40O10 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 185405

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ctttgtcttgtcctgcttttt 287
              |||||||||||||||||||||
Sbjct: 164914 ctttgtcttgtcctgcttttt 164894



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>gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 181974

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 267    ctttgtcttgtcctgcttttt 287
              |||||||||||||||||||||
Sbjct: 171937 ctttgtcttgtcctgcttttt 171957



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>dbj|AK105210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-109-B03, full
           insert sequence
          Length = 912

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                        
Query: 263 aagcctttgtcttgtcctgctttttagcctttttagtcttccaca 307
           |||| ||| ||||||||||||| |||||||||  || ||||||||
Sbjct: 709 aagcatttatcttgtcctgcttcttagcctttccagacttccaca 665



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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
              sequence
          Length = 299633

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 267    ctttgtcttgtcctgcttttt 287
              |||||||||||||||||||||
Sbjct: 281959 ctttgtcttgtcctgcttttt 281939



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>emb|BX284676.8| Mouse DNA sequence from clone RP23-258L18 on chromosome X, complete
              sequence
          Length = 176762

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 282    ctttttagcctttttagtctt 302
              |||||||||||||||||||||
Sbjct: 173572 ctttttagcctttttagtctt 173552



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>ref|XM_416336.1| PREDICTED: Gallus gallus similar to KIAA1549 protein (LOC418102),
            mRNA
          Length = 6557

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 96   agagattcagtgcattggagtgctcaga 123
            ||||||||||||| ||| ||||||||||
Sbjct: 4184 agagattcagtgctttgaagtgctcaga 4211



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>ref|XM_761718.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_157_2280_3878)
           partial mRNA
          Length = 1599

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 254 tgctgcttgaagcctttgtc 273
           ||||||||||||||||||||
Sbjct: 146 tgctgcttgaagcctttgtc 165



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>gb|AY230433.1| Cochliobolus heterostrophus kinesin (KLP8) gene, complete cds
          Length = 5176

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 289  gcctttttagtcttccacaaagag 312
            ||||||||||||||||||| ||||
Sbjct: 4656 gcctttttagtcttccacagagag 4633



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>ref|XM_778084.1| PREDICTED: Strongylocentrotus purpuratus similar to Bromodomain
            adjacent to zinc finger domain 2B (hWALp4) (LOC577880),
            mRNA
          Length = 5637

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 227  tgcctgaagcatttgccttg 246
            ||||||||||||||||||||
Sbjct: 1571 tgcctgaagcatttgccttg 1590



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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 179     agcaggcatgcaaacagttt 198
               ||||||||||||||||||||
Sbjct: 3311887 agcaggcatgcaaacagttt 3311906



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>gb|AC004024.4| Homo sapiens 12q24.2 PAC RP1-128M12 (Roswell Park Cancer Institute
             Human PAC library) complete sequence
          Length = 79158

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   agagtaacatcacagagagtgatg 144
             |||||||||||||||| |||||||
Sbjct: 52213 agagtaacatcacagaaagtgatg 52236



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>gb|AC025477.6| Homo sapiens chromosome 5 clone RP11-432A10, complete sequence
          Length = 154272

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    cagtttttcatttactgctg 212
              ||||||||||||||||||||
Sbjct: 143086 cagtttttcatttactgctg 143105



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ctttgtcttgtcctgctttt 286
              ||||||||||||||||||||
Sbjct: 527736 ctttgtcttgtcctgctttt 527717



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 283      tttttagcctttttagtctt 302
                ||||||||||||||||||||
Sbjct: 24845255 tttttagcctttttagtctt 24845274



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>gb|AC105186.14| Homo sapiens chromosome 8, clone CTD-2323A1, complete sequence
          Length = 114669

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    tttcatttactgctgtggct 217
              ||||||||||||||||||||
Sbjct: 100334 tttcatttactgctgtggct 100353



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>dbj|AP004737.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0072A21
          Length = 158287

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 283   tttttagcctttttagtctt 302
             ||||||||||||||||||||
Sbjct: 56338 tttttagcctttttagtctt 56357



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    ctttgtcttgtcctgctttt 286
              ||||||||||||||||||||
Sbjct: 527736 ctttgtcttgtcctgctttt 527717



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>emb|BX000493.1|CNS08CDJ Oryza sativa chromosome 11, . BAC OSJNBb0037D03 of library OSJNBb from
             chromosome 11 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 130544

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 267   ctttgtcttgtcctgctttt 286
             ||||||||||||||||||||
Sbjct: 42576 ctttgtcttgtcctgctttt 42595


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,179,605
Number of Sequences: 3902068
Number of extensions: 3179605
Number of successful extensions: 59124
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59039
Number of HSP's gapped (non-prelim): 85
length of query: 335
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 313
effective length of database: 17,147,199,772
effective search space: 5367073528636
effective search space used: 5367073528636
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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